Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0057
(715 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 23 2.2
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 23 2.2
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 23 2.2
DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex det... 23 3.8
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase... 23 3.8
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 22 6.6
DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex det... 21 8.8
DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex det... 21 8.8
DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex det... 21 8.8
DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex det... 21 8.8
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 23.4 bits (48), Expect = 2.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 61 QEVDDD*LKNWCPLLF*ESVHLISLKYYGSK 153
QEV LKN LF + + +++K +GSK
Sbjct: 33 QEVKQSFLKNQLQALFQPTDNKLAMKLFGSK 63
Score = 23.0 bits (47), Expect = 2.9
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -2
Query: 279 LHRISSISSFWSRLLTA*LSFSLIVSSLCLAGFEDD 172
+H SS +W + L +LI+ + ++ F DD
Sbjct: 81 IHPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDD 116
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 23.4 bits (48), Expect = 2.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 61 QEVDDD*LKNWCPLLF*ESVHLISLKYYGSK 153
QEV LKN LF + + +++K +GSK
Sbjct: 33 QEVKQSFLKNQLQALFQPTDNKLAMKLFGSK 63
Score = 23.0 bits (47), Expect = 2.9
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -2
Query: 279 LHRISSISSFWSRLLTA*LSFSLIVSSLCLAGFEDD 172
+H SS +W + L +LI+ + ++ F DD
Sbjct: 81 IHPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDD 116
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 23.4 bits (48), Expect = 2.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 61 QEVDDD*LKNWCPLLF*ESVHLISLKYYGSK 153
QEV LKN LF + + +++K +GSK
Sbjct: 33 QEVKQSFLKNQLQALFQPTDNKLAMKLFGSK 63
Score = 23.0 bits (47), Expect = 2.9
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -2
Query: 279 LHRISSISSFWSRLLTA*LSFSLIVSSLCLAGFEDD 172
+H SS +W + L +LI+ + ++ F DD
Sbjct: 81 IHPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDD 116
>DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex
determiner protein.
Length = 178
Score = 22.6 bits (46), Expect = 3.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 8 ALSNNEDYQYNRSYFKFNRKL 70
+LSNN Y +Y +N+KL
Sbjct: 84 SLSNNYKYSNYNNYNNYNKKL 104
>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
protein.
Length = 1143
Score = 22.6 bits (46), Expect = 3.8
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +2
Query: 392 EFPNSYPYAPPVVKFMTP 445
EFP+ P+AP ++ +TP
Sbjct: 876 EFPSVRPFAPLLLLHLTP 893
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 21.8 bits (44), Expect = 6.6
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 623 SLVRAIDMMLAGLKGFVYLVLLK 555
S V+AID+ ++ FV+L L++
Sbjct: 271 SYVKAIDVWMSSCSVFVFLSLME 293
>DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 8.8
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +2
Query: 17 NNEDYQYNRSYFKFNRKL 70
+N +Y+YN + +N+KL
Sbjct: 91 HNNNYKYNYNNNNYNKKL 108
>DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 8.8
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +2
Query: 17 NNEDYQYNRSYFKFNRKL 70
+N +Y+YN + +N+KL
Sbjct: 91 HNNNYKYNYNNNNYNKKL 108
>DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 8.8
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +2
Query: 17 NNEDYQYNRSYFKFNRKL 70
+N +Y+YN + +N+KL
Sbjct: 91 HNNNYKYNYNNNNYNKKL 108
>DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 8.8
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +2
Query: 17 NNEDYQYNRSYFKFNRKL 70
+N +Y+YN + +N+KL
Sbjct: 91 HNNNYKYNYNNNNYNKKL 108
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,611
Number of Sequences: 438
Number of extensions: 4072
Number of successful extensions: 18
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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