Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0055
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    27   2.0  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    26   6.0  
SPAC1952.12c |csn71|csn7a, csn7|COP9/signalosome complex subunit...    25   7.9  

>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = +2

Query: 323 ASLKSYGGNNLGAXKTPFTPXXXLGSSVQGDSXHGLSAGPVAYSTPS 463
           ASL S   +NL A  TP T    + SSV  DS     +  V  +T S
Sbjct: 170 ASLSSASTDNLAASVTPTTVAASVASSVDTDSASATISSVVDSATSS 216


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
            homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -3

Query: 359  HQDYYLHSFSKMRRRGVLSYRKIIRLENDLXC*KKQSF 246
            H+D+      + RR+ +    +I++LENDL   +++ F
Sbjct: 1043 HEDFSSLGVHEYRRKEIEQQVQILKLENDLVAARRRLF 1080


>SPAC1952.12c |csn71|csn7a, csn7|COP9/signalosome complex subunit
           7a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -3

Query: 524 WVH*QQVXK*KPCDHQGSQRKMEYCKLQARQKAHXWNRL 408
           W+  Q+V K +P D    +    +C+   R  +  WN L
Sbjct: 21  WIECQEVQKSQPIDSAVLRTLEIFCRGDIRDASSEWNEL 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,173,326
Number of Sequences: 5004
Number of extensions: 32412
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)