Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0055
         (700 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M63449-1|AAA29050.1| 1060|Drosophila melanogaster zinc-finger ho...    29   8.0  
BT011080-1|AAR82746.1| 1025|Drosophila melanogaster SD01785p pro...    29   8.0  
BT003277-1|AAO25034.1|  747|Drosophila melanogaster LD10638p pro...    29   8.0  
AE014297-4662|AAF57084.1|  747|Drosophila melanogaster CG1322-PA...    29   8.0  
AE014297-4660|AAF57083.1| 1054|Drosophila melanogaster CG1322-PB...    29   8.0  

>M63449-1|AAA29050.1| 1060|Drosophila melanogaster zinc-finger
           homeodomain protein 1 protein.
          Length = 1060

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = -3

Query: 110 SAPGSLPKIQLNYIAAVY----HNYIAAAIALDPVRLH 9
           +AP   P    NY+ A      HN++AAA  LDP R+H
Sbjct: 480 AAPAPFPPFHPNYMNAALLAFPHNFMAAAAGLDP-RVH 516


>BT011080-1|AAR82746.1| 1025|Drosophila melanogaster SD01785p
           protein.
          Length = 1025

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = -3

Query: 110 SAPGSLPKIQLNYIAAVY----HNYIAAAIALDPVRLH 9
           +AP   P    NY+ A      HN++AAA  LDP R+H
Sbjct: 445 AAPAPFPPFHPNYMNAALLAFPHNFMAAAAGLDP-RVH 481


>BT003277-1|AAO25034.1|  747|Drosophila melanogaster LD10638p
           protein.
          Length = 747

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = -3

Query: 110 SAPGSLPKIQLNYIAAVY----HNYIAAAIALDPVRLH 9
           +AP   P    NY+ A      HN++AAA  LDP R+H
Sbjct: 167 AAPAPFPPFHPNYMNAALLAFPHNFMAAAAGLDP-RVH 203


>AE014297-4662|AAF57084.1|  747|Drosophila melanogaster CG1322-PA,
           isoform A protein.
          Length = 747

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = -3

Query: 110 SAPGSLPKIQLNYIAAVY----HNYIAAAIALDPVRLH 9
           +AP   P    NY+ A      HN++AAA  LDP R+H
Sbjct: 167 AAPAPFPPFHPNYMNAALLAFPHNFMAAAAGLDP-RVH 203


>AE014297-4660|AAF57083.1| 1054|Drosophila melanogaster CG1322-PB,
           isoform B protein.
          Length = 1054

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = -3

Query: 110 SAPGSLPKIQLNYIAAVY----HNYIAAAIALDPVRLH 9
           +AP   P    NY+ A      HN++AAA  LDP R+H
Sbjct: 474 AAPAPFPPFHPNYMNAALLAFPHNFMAAAAGLDP-RVH 510


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,892,015
Number of Sequences: 53049
Number of extensions: 378899
Number of successful extensions: 720
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)