Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0054
(605 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF506023-1|AAM46899.1| 76|Tribolium castaneum polyubiquitin pr... 121 4e-30
AF506022-1|AAM46898.1| 685|Tribolium castaneum polyubiquitin pr... 121 4e-30
AF506021-1|AAM46897.1| 64|Tribolium castaneum polyubiquitin pr... 109 1e-26
AF506020-1|AAM46896.1| 112|Tribolium castaneum polyubiquitin pr... 107 7e-26
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 25 0.65
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 25 0.65
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 25 0.65
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 25 0.65
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 25 0.65
AM292344-1|CAL23156.1| 291|Tribolium castaneum gustatory recept... 24 1.1
AY043292-1|AAK96031.1| 323|Tribolium castaneum homeodomain tran... 23 2.6
EF222296-1|ABN79656.2| 403|Tribolium castaneum arginine vasopre... 21 6.1
>AF506023-1|AAM46899.1| 76|Tribolium castaneum polyubiquitin
protein.
Length = 76
Score = 121 bits (292), Expect = 4e-30
Identities = 58/59 (98%), Positives = 59/59 (100%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 12 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
>AF506022-1|AAM46898.1| 685|Tribolium castaneum polyubiquitin
protein.
Length = 685
Score = 121 bits (292), Expect = 4e-30
Identities = 58/59 (98%), Positives = 59/59 (100%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 12 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 121 bits (292), Expect = 4e-30
Identities = 58/59 (98%), Positives = 59/59 (100%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 88 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 121 bits (292), Expect = 4e-30
Identities = 58/59 (98%), Positives = 59/59 (100%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 164 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 121 bits (292), Expect = 4e-30
Identities = 58/59 (98%), Positives = 59/59 (100%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 240 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 121 bits (292), Expect = 4e-30
Identities = 58/59 (98%), Positives = 59/59 (100%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 316 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
Score = 121 bits (292), Expect = 4e-30
Identities = 58/59 (98%), Positives = 59/59 (100%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 468 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 526
Score = 121 bits (292), Expect = 4e-30
Identities = 58/59 (98%), Positives = 59/59 (100%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 544 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 602
Score = 121 bits (292), Expect = 4e-30
Identities = 58/59 (98%), Positives = 59/59 (100%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 620 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 678
Score = 119 bits (286), Expect = 2e-29
Identities = 57/59 (96%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVEPSDTIENVKAKIQDKEGIPP+QQR IFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 392 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLSDYNIQKESTLHLV 450
>AF506021-1|AAM46897.1| 64|Tribolium castaneum polyubiquitin
protein.
Length = 64
Score = 109 bits (263), Expect = 1e-26
Identities = 52/53 (98%), Positives = 53/53 (100%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKE 205
TITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKE
Sbjct: 12 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
>AF506020-1|AAM46896.1| 112|Tribolium castaneum polyubiquitin
protein.
Length = 112
Score = 107 bits (257), Expect = 7e-26
Identities = 51/53 (96%), Positives = 52/53 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKE 205
TITLEVEPSDTIENVKAKIQDKEGIPP+QQR IFAGKQLEDGRTLSDYNIQKE
Sbjct: 60 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLSDYNIQKE 112
Score = 88.6 bits (210), Expect = 4e-20
Identities = 41/42 (97%), Positives = 42/42 (100%)
Frame = +2
Query: 98 KIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 1 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 42
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 24.6 bits (51), Expect = 0.65
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 496 LEGTYLXVVVFEDHRAVTLPAVVTVLHHR 410
L GTY ++F +V L VV HHR
Sbjct: 273 LLGTYFNCIMFMVASSVVLTVVVLNYHHR 301
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 24.6 bits (51), Expect = 0.65
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 496 LEGTYLXVVVFEDHRAVTLPAVVTVLHHR 410
L GTY ++F +V L VV HHR
Sbjct: 273 LIGTYFNCIMFMVASSVVLTVVVLNYHHR 301
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 24.6 bits (51), Expect = 0.65
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 496 LEGTYLXVVVFEDHRAVTLPAVVTVLHHR 410
L GTY ++F +V L VV HHR
Sbjct: 273 LLGTYFNCIMFMVASSVVLTVVVLNYHHR 301
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 24.6 bits (51), Expect = 0.65
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 496 LEGTYLXVVVFEDHRAVTLPAVVTVLHHR 410
L GTY ++F +V L VV HHR
Sbjct: 273 LLGTYFNCIMFMVASSVVLTVVVLNYHHR 301
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 24.6 bits (51), Expect = 0.65
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 496 LEGTYLXVVVFEDHRAVTLPAVVTVLHHR 410
L GTY ++F +V L VV HHR
Sbjct: 273 LIGTYFNCIMFMVASSVVLTVVVLNYHHR 301
>AM292344-1|CAL23156.1| 291|Tribolium castaneum gustatory receptor
candidate 23 protein.
Length = 291
Score = 23.8 bits (49), Expect = 1.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 387 CSPVHSRRRRWILPFSSTL*NLRTASLTFFFLCLIF 280
C P S R + + FS+T L A +TF + L F
Sbjct: 253 CRPTFSAARFYGIDFSNTFLGLVGAVVTFLIVLLQF 288
>AY043292-1|AAK96031.1| 323|Tribolium castaneum homeodomain
transcription factor Prothoraxlessprotein.
Length = 323
Score = 22.6 bits (46), Expect = 2.6
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = -1
Query: 239 HHEASTPGGGWIPSGYCSPR 180
HH P GG P G PR
Sbjct: 63 HHYGGPPSGGQPPQGMPYPR 82
>EF222296-1|ABN79656.2| 403|Tribolium castaneum arginine
vasopressin receptor protein.
Length = 403
Score = 21.4 bits (43), Expect = 6.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 211 GGFLLDIVVREGTSIFQLLSS 149
GGFLL VV+ G ++ LSS
Sbjct: 108 GGFLLCKVVKYGQTLGPYLSS 128
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,915
Number of Sequences: 336
Number of extensions: 2429
Number of successful extensions: 21
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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