Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0054
(605 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.76
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.76
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.76
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.76
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.76
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.76
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 23 2.3
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 23 2.3
AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precur... 23 3.1
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 4.1
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 4.1
AY343324-1|AAQ21381.1| 156|Apis mellifera vacuolar H+ ATP synth... 22 5.4
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.76
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 496 LEGTYLXVVVFEDHRAVTLPAVVTVLHHR 410
L G+Y ++F +V L +V + HHR
Sbjct: 256 LLGSYFNCIMFMVASSVVLTVLVLIFHHR 284
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.76
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 496 LEGTYLXVVVFEDHRAVTLPAVVTVLHHR 410
L G+Y ++F +V L +V + HHR
Sbjct: 256 LLGSYFNCIMFMVASSVVLTVLVLIFHHR 284
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.76
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 496 LEGTYLXVVVFEDHRAVTLPAVVTVLHHR 410
L G+Y ++F +V L +V + HHR
Sbjct: 256 LLGSYFNCIMFMVASSVVLTVLVLIFHHR 284
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.76
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 496 LEGTYLXVVVFEDHRAVTLPAVVTVLHHR 410
L G+Y ++F +V L +V + HHR
Sbjct: 256 LIGSYFNCIMFMVASSVVLTVLVLIFHHR 284
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.76
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 496 LEGTYLXVVVFEDHRAVTLPAVVTVLHHR 410
L G+Y ++F +V L +V + HHR
Sbjct: 256 LIGSYFNCIMFMVASSVVLTVLVLIFHHR 284
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.76
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 496 LEGTYLXVVVFEDHRAVTLPAVVTVLHHR 410
L G+Y ++F +V L +V + HHR
Sbjct: 256 LIGSYFNCIMFMVASSVVLTVLVLIFHHR 284
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 23.0 bits (47), Expect = 2.3
Identities = 16/65 (24%), Positives = 27/65 (41%)
Frame = +2
Query: 29 VPSRASTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKES 208
V SR+ + + + DT E K +Q KEG Q+ F G L + +
Sbjct: 919 VASRSINVKWQHKSQDTTEVTKYILQYKEGDAGIWQQQEFTGPPLPYAALIDELKPATRY 978
Query: 209 TLHLV 223
T+ ++
Sbjct: 979 TIRVI 983
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 23.0 bits (47), Expect = 2.3
Identities = 16/65 (24%), Positives = 27/65 (41%)
Frame = +2
Query: 29 VPSRASTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKES 208
V SR+ + + + DT E K +Q KEG Q+ F G L + +
Sbjct: 915 VASRSINVKWQHKSQDTTEVTKYILQYKEGDAGIWQQQEFTGPPLPYAALIDELKPATRY 974
Query: 209 TLHLV 223
T+ ++
Sbjct: 975 TIRVI 979
>AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precursor
protein.
Length = 405
Score = 22.6 bits (46), Expect = 3.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 456 WSSKTTTNK*VPSSL*ETLATAVYD 530
WSSKT TN V S+ + + YD
Sbjct: 222 WSSKTETNATVLHSINKVIIHPKYD 246
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 4.1
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 496 LEGTYLXVVVFEDHRAVTLPAVVTVLHHR 410
L G+Y ++F +V L +V HHR
Sbjct: 324 LLGSYFNCIMFMVASSVVLTVLVLNFHHR 352
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 4.1
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 496 LEGTYLXVVVFEDHRAVTLPAVVTVLHHR 410
L G+Y ++F +V L +V HHR
Sbjct: 324 LIGSYFNCIMFMVASSVVLTVLVLNFHHR 352
>AY343324-1|AAQ21381.1| 156|Apis mellifera vacuolar H+ ATP synthase
16 kDa proteolipidsubunit protein.
Length = 156
Score = 21.8 bits (44), Expect = 5.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1
Query: 218 GGGWIPSGYCSPRGYVHLPA 159
GG P GY +G+VHL A
Sbjct: 77 GGLEEPKGYTLFKGFVHLGA 96
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,720
Number of Sequences: 438
Number of extensions: 2842
Number of successful extensions: 18
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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