Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0054
(605 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23410.1 68414.m02932 ubiquitin extension protein, putative /... 186 8e-48
At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / ... 185 2e-47
At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / ... 184 3e-47
At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to GI:17677 116 2e-26
At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to GI:92... 116 2e-26
At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to GI:92... 116 2e-26
At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3) senescence... 116 2e-26
At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3) senescence... 116 2e-26
At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3) senescence... 116 2e-26
At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3) senescence... 116 2e-26
At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3) senescence... 116 2e-26
At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to GI:3... 116 2e-26
At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to GI:1... 116 2e-26
At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to GI:1... 116 2e-26
At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to GI:1... 116 2e-26
At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / ... 116 2e-26
At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / ... 116 2e-26
At2g35635.1 68415.m04370 ubiquitin family protein contains INTER... 116 2e-26
At1g65350.1 68414.m07413 polyubiquitin, putative similar to poly... 116 2e-26
At1g31340.1 68414.m03835 ubiquitin family protein contains INTER... 116 2e-26
At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to poly... 114 4e-26
At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to polyu... 114 5e-26
At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to polyu... 109 1e-24
At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam ... 95 4e-20
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha... 72 3e-13
At5g42220.1 68418.m05139 ubiquitin family protein contains INTER... 58 6e-09
At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative simi... 53 2e-07
At1g53950.1 68414.m06145 ubiquitin family protein contains INTER... 52 2e-07
At2g17200.1 68415.m01986 ubiquitin family protein weak similarit... 52 4e-07
At2g17190.1 68415.m01985 ubiquitin family protein contains INTER... 51 7e-07
At3g13235.1 68416.m01666 ubiquitin family protein contains INTER... 44 8e-05
At5g11080.1 68418.m01294 ubiquitin family protein contains INTER... 44 1e-04
At4g03370.1 68417.m00459 ubiquitin family protein contains INTER... 43 2e-04
At4g02970.1 68417.m00404 ubiquitin family protein contains INTER... 42 4e-04
At4g03350.1 68417.m00457 ubiquitin family protein contains INTER... 41 6e-04
At1g79650.3 68414.m09289 DNA repair protein RAD23, putative simi... 39 0.002
At1g79650.2 68414.m09288 DNA repair protein RAD23, putative simi... 39 0.002
At1g79650.1 68414.m09287 DNA repair protein RAD23, putative simi... 39 0.002
At1g16190.1 68414.m01939 DNA repair protein RAD23, putative simi... 39 0.002
At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ... 37 0.009
At2g46500.2 68415.m05791 phosphatidylinositol 3- and 4-kinase fa... 37 0.012
At2g46500.1 68415.m05790 phosphatidylinositol 3- and 4-kinase fa... 37 0.012
At4g05230.1 68417.m00789 ubiquitin family protein contains INTER... 36 0.021
At4g03360.1 68417.m00458 ubiquitin family protein contains INTER... 36 0.021
At4g02950.1 68417.m00402 ubiquitin family protein contains INTER... 36 0.021
At5g14360.1 68418.m01678 ubiquitin family protein contains INTER... 35 0.048
At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC1... 34 0.084
At4g01000.1 68417.m00135 ubiquitin family protein low similarity... 33 0.11
At4g05310.1 68417.m00809 ubiquitin family protein contains INTER... 32 0.34
At2g12550.1 68415.m01357 ubiquitin-associated (UBA)/TS-N domain-... 31 0.45
At5g24240.1 68418.m02852 phosphatidylinositol 3- and 4-kinase fa... 31 0.78
At5g40630.1 68418.m04932 ubiquitin family protein contains INTER... 30 1.0
At4g05270.1 68417.m00797 ubiquitin family protein contains INTER... 30 1.0
At4g05250.1 68417.m00793 ubiquitin family protein contains INTER... 30 1.0
At3g14130.1 68416.m01787 (S)-2-hydroxy-acid oxidase, peroxisomal... 30 1.4
At1g22050.1 68414.m02758 ubiquitin family protein contains INTER... 30 1.4
At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp... 30 1.4
At1g11970.1 68414.m01383 hypothetical protein 29 1.8
At3g14150.1 68416.m01789 (S)-2-hydroxy-acid oxidase, peroxisomal... 29 2.4
At1g47680.1 68414.m05297 hypothetical protein 29 2.4
At5g12280.1 68418.m01444 hypothetical protein 29 3.2
At1g67700.2 68414.m07726 expressed protein 28 4.2
At1g67700.1 68414.m07725 expressed protein 28 4.2
At4g18360.1 68417.m02723 (S)-2-hydroxy-acid oxidase, peroxisomal... 28 5.5
At2g20420.1 68415.m02383 succinyl-CoA ligase [GDP-forming] beta-... 27 7.3
At1g78020.1 68414.m09092 senescence-associated protein-related s... 27 9.6
>At1g23410.1 68414.m02932 ubiquitin extension protein, putative /
40S ribosomal protein S27A (RPS27aA) strong similarity
to ubiquitin extension protein (UBQ5) GB:AAA32906
GI:166934 from (Arabidopsis thaliana)
Length = 156
Score = 186 bits (454), Expect = 8e-48
Identities = 91/143 (63%), Positives = 101/143 (70%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVX 226
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71
Query: 227 XXXXXXXXXXXXNYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEQCGAGVF 406
Y+ P LAVL+FYKVD +GK+ RL++EC CG G F
Sbjct: 72 RLRGGAKKRKKKTYTKPKKIKHTHKKVKLAVLQFYKVDGSGKVQRLKKECPSVSCGPGTF 131
Query: 407 MAVMEDRHYCGKCHSTMVFKDDD 475
MA DRHYCGKC +T VFK D
Sbjct: 132 MASHFDRHYCGKCGTTYVFKKAD 154
>At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / 40S
ribosomal protein S27A (RPS27aB) identical to GI:166936
Length = 157
Score = 185 bits (450), Expect = 2e-47
Identities = 90/142 (63%), Positives = 101/142 (71%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVX 226
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71
Query: 227 XXXXXXXXXXXXNYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEQCGAGVF 406
Y+ P LAVL+FYKVD +GK+ RLR+EC CGAG F
Sbjct: 72 RLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDGSGKVQRLRKECPNATCGAGTF 131
Query: 407 MAVMEDRHYCGKCHSTMVFKDD 472
MA DRHYCGKC T V++ +
Sbjct: 132 MASHFDRHYCGKCGLTYVYQKE 153
>At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / 40S
ribosomal protein S27A (RPS27aC) identical to GI:166933,
GI:166934
Length = 157
Score = 184 bits (449), Expect = 3e-47
Identities = 89/142 (62%), Positives = 101/142 (71%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVX 226
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71
Query: 227 XXXXXXXXXXXXNYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEQCGAGVF 406
Y+ P LAVL+FYK+D +GK+ RLR+EC CGAG F
Sbjct: 72 RLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKIDGSGKVQRLRKECPNATCGAGTF 131
Query: 407 MAVMEDRHYCGKCHSTMVFKDD 472
MA DRHYCGKC T V++ +
Sbjct: 132 MASHFDRHYCGKCGLTYVYQKE 153
>At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to GI:17677
Length = 382
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 240 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 316 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374
>At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 240 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
>At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 240 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
>At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 312
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 44.8 bits (101), Expect = 4e-05
Identities = 21/23 (91%), Positives = 22/23 (95%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKE 115
TITLEVE SDTI+NVKAKIQDKE
Sbjct: 240 TITLEVESSDTIDNVKAKIQDKE 262
Score = 35.9 bits (79), Expect = 0.021
Identities = 32/77 (41%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +3
Query: 12 MQIFVKYPHGQ-VPSPLRSSRQIPSRM*KLKFKTKRESLPINRG*SLLESSWKMDVPSRT 188
MQIFVK G+ + + SS I + K K + K L + S LESS +MDV T
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNV--KAKIQDKEVFLRTSSVSSSLESSLRMDVLWPT 286
Query: 189 TISRRNPPSTWC*GFVV 239
T SRR+ TW FVV
Sbjct: 287 TTSRRSLLFTWSCVFVV 303
>At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 240 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 316 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374
Score = 44.8 bits (101), Expect = 4e-05
Identities = 21/23 (91%), Positives = 22/23 (95%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKE 115
TITLEVE SDTI+NVKAKIQDKE
Sbjct: 392 TITLEVESSDTIDNVKAKIQDKE 414
Score = 35.9 bits (79), Expect = 0.021
Identities = 32/77 (41%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +3
Query: 12 MQIFVKYPHGQ-VPSPLRSSRQIPSRM*KLKFKTKRESLPINRG*SLLESSWKMDVPSRT 188
MQIFVK G+ + + SS I + K K + K L + S LESS +MDV T
Sbjct: 381 MQIFVKTLTGKTITLEVESSDTIDNV--KAKIQDKEVFLRTSSVSSSLESSLRMDVLWPT 438
Query: 189 TISRRNPPSTWC*GFVV 239
T SRR+ TW FVV
Sbjct: 439 TTSRRSLLFTWSCVFVV 455
>At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 240 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
Score = 44.8 bits (101), Expect = 4e-05
Identities = 21/23 (91%), Positives = 22/23 (95%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKE 115
TITLEVE SDTI+NVKAKIQDKE
Sbjct: 316 TITLEVESSDTIDNVKAKIQDKE 338
Score = 35.9 bits (79), Expect = 0.021
Identities = 32/77 (41%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +3
Query: 12 MQIFVKYPHGQ-VPSPLRSSRQIPSRM*KLKFKTKRESLPINRG*SLLESSWKMDVPSRT 188
MQIFVK G+ + + SS I + K K + K L + S LESS +MDV T
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNV--KAKIQDKEVFLRTSSVSSSLESSLRMDVLWPT 362
Query: 189 TISRRNPPSTWC*GFVV 239
T SRR+ TW FVV
Sbjct: 363 TTSRRSLLFTWSCVFVV 379
>At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 240 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 316 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374
Score = 44.8 bits (101), Expect = 4e-05
Identities = 21/23 (91%), Positives = 22/23 (95%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKE 115
TITLEVE SDTI+NVKAKIQDKE
Sbjct: 392 TITLEVESSDTIDNVKAKIQDKE 414
Score = 35.9 bits (79), Expect = 0.021
Identities = 32/77 (41%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +3
Query: 12 MQIFVKYPHGQ-VPSPLRSSRQIPSRM*KLKFKTKRESLPINRG*SLLESSWKMDVPSRT 188
MQIFVK G+ + + SS I + K K + K L + S LESS +MDV T
Sbjct: 381 MQIFVKTLTGKTITLEVESSDTIDNV--KAKIQDKEVFLRTSSVSSSLESSLRMDVLWPT 438
Query: 189 TISRRNPPSTWC*GFVV 239
T SRR+ TW FVV
Sbjct: 439 TTSRRSLLFTWSCVFVV 455
>At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 240 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
Score = 44.8 bits (101), Expect = 4e-05
Identities = 21/23 (91%), Positives = 22/23 (95%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKE 115
TITLEVE SDTI+NVKAKIQDKE
Sbjct: 316 TITLEVESSDTIDNVKAKIQDKE 338
Score = 35.9 bits (79), Expect = 0.021
Identities = 32/77 (41%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +3
Query: 12 MQIFVKYPHGQ-VPSPLRSSRQIPSRM*KLKFKTKRESLPINRG*SLLESSWKMDVPSRT 188
MQIFVK G+ + + SS I + K K + K L + S LESS +MDV T
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNV--KAKIQDKEVFLRTSSVSSSLESSLRMDVLWPT 362
Query: 189 TISRRNPPSTWC*GFVV 239
T SRR+ TW FVV
Sbjct: 363 TTSRRSLLFTWSCVFVV 379
>At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to
GI:304117
Length = 229
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
>At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 240 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
>At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 229
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
>At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 240 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298
>At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / 60S
ribosomal protein L40 (RPL40B) identical to GI:166929,
GI:166930
Length = 128
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
>At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / 60S
ribosomal protein L40 (RPL40A) identical to GI:166930,
GI:166931
Length = 128
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
>At2g35635.1 68415.m04370 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 154
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 78.2 bits (184), Expect = 4e-15
Identities = 33/58 (56%), Positives = 46/58 (79%)
Frame = +2
Query: 50 ITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
I +++EP+DTI+ +K ++++KEGIPP QQRLI+AGKQL D +T DY I+ S LHLV
Sbjct: 89 IEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLV 146
>At1g65350.1 68414.m07413 polyubiquitin, putative similar to
polyubiquitin GI:248337 from [Zea mays]
Length = 294
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 112 bits (270), Expect = 1e-25
Identities = 54/59 (91%), Positives = 57/59 (96%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKE IPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 163 TITLEVESSDTIDNVKAKIQDKEWIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 221
Score = 108 bits (260), Expect = 2e-24
Identities = 54/59 (91%), Positives = 57/59 (96%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+D NIQKESTLHLV
Sbjct: 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD-NIQKESTLHLV 145
Score = 77.4 bits (182), Expect = 7e-15
Identities = 37/42 (88%), Positives = 39/42 (92%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDG 172
TITLEVE S TI+NVKAKIQDKEGIPP+QQRLIFAGKQLE G
Sbjct: 239 TITLEVESSGTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEGG 280
>At1g31340.1 68414.m03835 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 156
Score = 116 bits (278), Expect = 2e-26
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
Score = 81.4 bits (192), Expect = 4e-16
Identities = 34/58 (58%), Positives = 47/58 (81%)
Frame = +2
Query: 50 ITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
I +++EP+DTI+ +K ++++KEGIPP QQRLI+AGKQL D +T DYNI+ S LHLV
Sbjct: 89 IEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLV 146
>At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to
polyubiquitin (ubq12) gene sequence GI:304121 from
[Arabidopsis thaliana]
Length = 230
Score = 114 bits (275), Expect = 4e-26
Identities = 54/59 (91%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+N+KAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 88 TITLEVESSDTIDNLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
Score = 109 bits (263), Expect = 1e-24
Identities = 53/59 (89%), Positives = 56/59 (94%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEGI P+QQRLIFAGKQ EDGRTL+DYNIQKESTLHLV
Sbjct: 164 TITLEVESSDTIDNVKAKIQDKEGISPDQQRLIFAGKQHEDGRTLADYNIQKESTLHLV 222
Score = 101 bits (242), Expect = 4e-22
Identities = 47/59 (79%), Positives = 54/59 (91%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
T LEVE SDTI+NVKAKIQD EGIPP+Q RLIFAGKQLEDGRTL+DYN+Q++STLHL+
Sbjct: 12 TKVLEVESSDTIDNVKAKIQDIEGIPPDQHRLIFAGKQLEDGRTLADYNVQEDSTLHLL 70
>At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to
polyubiquitin (ubq9) gene sequence GI:304120 from
[Arabidopsis thaliana]
Length = 322
Score = 114 bits (274), Expect = 5e-26
Identities = 53/59 (89%), Positives = 58/59 (98%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKEG+PP+QQRLIFAGKQL+DGRTL+DYNIQKESTLHLV
Sbjct: 90 TITLEVESSDTIDNVKAKIQDKEGVPPDQQRLIFAGKQLDDGRTLADYNIQKESTLHLV 148
Score = 111 bits (268), Expect = 3e-25
Identities = 53/59 (89%), Positives = 56/59 (94%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TI LEVE SDT +NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 166 TIALEVESSDTTDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 224
Score = 100 bits (240), Expect = 6e-22
Identities = 51/60 (85%), Positives = 55/60 (91%), Gaps = 1/60 (1%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLV 223
TITLEVE SDTI+NVKAKIQDKE I P+QQRLIFAG+QLEDG TL+DYNIQKESTLHLV
Sbjct: 242 TITLEVESSDTIDNVKAKIQDKERIQPDQQRLIFAGEQLEDGYYTLADYNIQKESTLHLV 301
Score = 90.6 bits (215), Expect = 7e-19
Identities = 43/58 (74%), Positives = 51/58 (87%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 220
TIT++V SDTI NVKAKIQD EGIP +QQRLIF+GK L+DGRTL+DY+IQK+S LHL
Sbjct: 14 TITIDVVSSDTINNVKAKIQDIEGIPLDQQRLIFSGKLLDDGRTLADYSIQKDSILHL 71
>At3g09790.1 68416.m01163 polyubiquitin (UBQ8) identical to
polyubiquitin (ubq8) GI:870793, GB:L05917 [Arabidopsis
thaliana] (Genetics 139 (2), 921-939 (1995))
Length = 631
Score = 109 bits (263), Expect = 1e-24
Identities = 53/59 (89%), Positives = 56/59 (94%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITLEV+ SDTI+NVKAKIQDKEGI P QQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct: 90 TITLEVKSSDTIDNVKAKIQDKEGILPRQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 148
Score = 103 bits (247), Expect = 9e-23
Identities = 50/59 (84%), Positives = 55/59 (93%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TITL+VE SD+I NVKAKIQ+KEGIP +QQRLIFAGKQLEDG TL+DYNIQKESTLHLV
Sbjct: 14 TITLDVETSDSIHNVKAKIQNKEGIPLDQQRLIFAGKQLEDGLTLADYNIQKESTLHLV 72
Score = 88.2 bits (209), Expect = 4e-18
Identities = 45/60 (75%), Positives = 50/60 (83%), Gaps = 2/60 (3%)
Frame = +2
Query: 50 ITLEVEPSDTIENVKAKIQDKEGIPP--NQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
I LEVE DTIENVKA +QDKEGI P N QRLIF GK+L+DG TL+DY+IQKESTLHLV
Sbjct: 331 INLEVESWDTIENVKAMVQDKEGIQPQPNLQRLIFLGKELKDGCTLADYSIQKESTLHLV 390
Score = 87.4 bits (207), Expect = 6e-18
Identities = 42/57 (73%), Positives = 48/57 (84%)
Frame = +2
Query: 50 ITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 220
ITLEV SDTI++VKAKIQDK G PP+QQ L+F G QL+DGRTL DYNI+ ESTLHL
Sbjct: 405 ITLEVLSSDTIKSVKAKIQDKVGSPPDQQILLFRGGQLQDGRTLGDYNIRNESTLHL 461
Score = 85.4 bits (202), Expect = 3e-17
Identities = 43/59 (72%), Positives = 48/59 (81%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
TI LEVE SDTI NVK KIQ KEGI P+QQ LIF G+QLEDG TL DY+I K+STL+LV
Sbjct: 563 TIILEVESSDTIANVKEKIQVKEGIKPDQQMLIFFGQQLEDGVTLGDYDIHKKSTLYLV 621
Score = 84.6 bits (200), Expect = 5e-17
Identities = 42/56 (75%), Positives = 47/56 (83%)
Frame = +2
Query: 56 LEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
LEVE SDTI+NVKAK+QDKE IP + RLIFAGK LE GRTL+ YNIQK STL+LV
Sbjct: 257 LEVESSDTIDNVKAKLQDKERIPMDLHRLIFAGKPLEGGRTLAHYNIQKGSTLYLV 312
Score = 83.0 bits (196), Expect = 1e-16
Identities = 43/71 (60%), Positives = 49/71 (69%)
Frame = +2
Query: 5 VKYANFRKVPSRASTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLS 184
VK +F TITLEVE SDTI+NVK KIQ K GIP ++QRLIF G+ L RTL
Sbjct: 473 VKTFSFSGETPTCKTITLEVESSDTIDNVKVKIQHKVGIPLDRQRLIFGGRVLVGSRTLL 532
Query: 185 DYNIQKESTLH 217
DYNIQK ST+H
Sbjct: 533 DYNIQKGSTIH 543
Score = 80.6 bits (190), Expect = 7e-16
Identities = 40/62 (64%), Positives = 50/62 (80%), Gaps = 2/62 (3%)
Frame = +2
Query: 41 ASTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQL--EDGRTLSDYNIQKESTL 214
+ T+TL+VE SDTIENVKAKIQD+EG+ P+ QRLIF G++L ED RTL+DY I+ STL
Sbjct: 169 SDTLTLKVESSDTIENVKAKIQDREGLRPDHQRLIFHGEELFTEDNRTLADYGIRNRSTL 228
Query: 215 HL 220
L
Sbjct: 229 CL 230
>At1g53930.1 68414.m06139 ubiquitin family protein contains Pfam
profile: PF00240 ubiquitin family
Length = 158
Score = 94.7 bits (225), Expect = 4e-20
Identities = 44/58 (75%), Positives = 50/58 (86%)
Frame = +2
Query: 50 ITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
I LEVE DTIEN+KAKIQDK+GIP +QQRLIF GKQLEDG TL+DYNIQ +S LHL+
Sbjct: 98 IVLEVENCDTIENIKAKIQDKQGIPVDQQRLIFKGKQLEDGLTLADYNIQNDSILHLI 155
>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
from [Arabidopsis thaliana]
Length = 78
Score = 71.7 bits (168), Expect = 3e-13
Identities = 30/58 (51%), Positives = 43/58 (74%)
Frame = +2
Query: 50 ITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
I +E+E +DTIE +K +I++KEGIPP QR+++ GKQL D T YN+++ S LHLV
Sbjct: 13 IDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYNLERGSVLHLV 70
>At5g42220.1 68418.m05139 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 879
Score = 57.6 bits (133), Expect = 6e-09
Identities = 28/69 (40%), Positives = 43/69 (62%)
Frame = +2
Query: 17 NFRKVPSRASTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 196
N + + SR T T +V ++T+ K KI + G+P QQRLIF G+ L+D LS+Y++
Sbjct: 27 NIKTLDSR--TYTFQVNKNETVLLFKEKIASETGVPVGQQRLIFRGRVLKDDHPLSEYHL 84
Query: 197 QKESTLHLV 223
+ TLHL+
Sbjct: 85 ENGHTLHLI 93
>At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative similar
to SP|P39940 Ubiquitin--protein ligase RSP5 (EC 6.3.2.-)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00240: Ubiquitin family, PF00632: HECT-domain
(ubiquitin-transferase)
Length = 873
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/68 (36%), Positives = 44/68 (64%)
Frame = +2
Query: 20 FRKVPSRASTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQ 199
F ++ S TI + E DT+E + +I+ K IP +QR+I+ GKQL+ +L+ Y+I+
Sbjct: 98 FVRMMSGGKTIVIHAEKYDTVEKLHQRIEWKTKIPALEQRVIYKGKQLQRENSLTYYSIE 157
Query: 200 KESTLHLV 223
++++L LV
Sbjct: 158 QDASLQLV 165
>At1g53950.1 68414.m06145 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 216
Score = 52.4 bits (120), Expect = 2e-07
Identities = 25/59 (42%), Positives = 39/59 (66%)
Frame = +2
Query: 38 RASTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTL 214
+ T LEV+ SDTI+ +K+ I D+ G P +QQ L G +L++ T+SDYNI+ ++ L
Sbjct: 149 KEKTFILEVKGSDTIKKLKSMIHDQGGPPVDQQDLNHLGTKLKNNATISDYNIKPDANL 207
Score = 48.4 bits (110), Expect = 4e-06
Identities = 23/37 (62%), Positives = 28/37 (75%)
Frame = +2
Query: 47 TITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGK 157
T T EV+ SDTI +KAK ++KEGIP QQRLIF G+
Sbjct: 61 TNTYEVKGSDTIRELKAKHEEKEGIPVEQQRLIFQGR 97
>At2g17200.1 68415.m01986 ubiquitin family protein weak similarity
to PLIC-2 (ubiquitin-like type II) [Homo sapiens]
GI:9937505; contains Pfam profiles PF00240: Ubiquitin
family, PF00627: UBA/TS-N domain
Length = 551
Score = 51.6 bits (118), Expect = 4e-07
Identities = 21/63 (33%), Positives = 37/63 (58%)
Frame = +2
Query: 35 SRASTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTL 214
S + +++ T+E+ K + +P NQQRLI+ G+ L+D +TL Y +Q + T+
Sbjct: 25 SNGTKFSVKTSLDSTVESFKELVAQSSDVPANQQRLIYKGRILKDDQTLLSYGLQADHTI 84
Query: 215 HLV 223
H+V
Sbjct: 85 HMV 87
>At2g17190.1 68415.m01985 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 538
Score = 50.8 bits (116), Expect = 7e-07
Identities = 22/63 (34%), Positives = 36/63 (57%)
Frame = +2
Query: 35 SRASTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTL 214
S + ++ T+E+ K I +P NQQRLI+ G+ L+D +TL Y +Q + T+
Sbjct: 25 SNGTKFSVTTSLDSTVESFKELIAQNSDVPANQQRLIYKGRILKDDQTLLSYGLQADHTV 84
Query: 215 HLV 223
H+V
Sbjct: 85 HMV 87
>At3g13235.1 68416.m01666 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 414
Score = 44.0 bits (99), Expect = 8e-05
Identities = 18/58 (31%), Positives = 37/58 (63%)
Frame = +2
Query: 50 ITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
ITL+V+ +T+ENVKA ++ + +P QQ+L++ G ++ + LS ++ + L ++
Sbjct: 13 ITLDVDSQETVENVKALLEVESNVPIQQQQLLYNGNEMGNSDKLSALGVKDDDLLMMM 70
>At5g11080.1 68418.m01294 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 352
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/62 (37%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Frame = +2
Query: 41 ASTITLEVEPSDTIENVKAKIQDKEGIPPNQQ-RLIFAGKQLEDGRTLSDYNIQKESTLH 217
++T TL VE + + ++K I G+ P +Q RL+F G+ L++ + LSDY++++ TL+
Sbjct: 20 STTHTLSVERTIPVRDLKQDICYYCGVSPERQPRLLFRGRVLKNDQRLSDYHVEEGHTLY 79
Query: 218 LV 223
LV
Sbjct: 80 LV 81
>At4g03370.1 68417.m00459 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 295
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/59 (33%), Positives = 35/59 (59%)
Frame = +2
Query: 44 STITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 220
ST ++++ DT+ K KI+ + IP ++Q + F GK LED + +++I + LHL
Sbjct: 11 STFSIDIGLQDTVLTFKRKIEMTQRIPVSRQTIFFQGKLLEDHLDIFEWDILQNPLLHL 69
>At4g02970.1 68417.m00404 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 270
Score = 41.5 bits (93), Expect = 4e-04
Identities = 22/59 (37%), Positives = 34/59 (57%)
Frame = +2
Query: 44 STITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 220
S+ ++ ++ +T+ +K KI+ +GIP ++Q L GK LED DY I ES L L
Sbjct: 11 SSFSITIDFGETVLEIKEKIEKSQGIPVSKQILYLDGKALEDDLHKIDYMILFESRLLL 69
>At4g03350.1 68417.m00457 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 263
Score = 41.1 bits (92), Expect = 6e-04
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +2
Query: 44 STITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTL 214
S+ ++ ++ +T+ +K KI+ +GIP ++Q L GK LED DY I ES L
Sbjct: 11 SSFSITIDFGETVLQIKEKIEKSQGIPVSKQILYLDGKALEDDLHKIDYMILFESLL 67
>At1g79650.3 68414.m09289 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 351
Score = 39.1 bits (87), Expect = 0.002
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +2
Query: 38 RASTITLEVEPSDTIENVKAKIQDKEG---IPPNQQRLIFAGKQLEDGRTLSDYNIQKES 208
+ S + V PSDTI VK I+D +G P QQ LI GK L+D +L + + +E
Sbjct: 9 KGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEG 68
Query: 209 TL 214
L
Sbjct: 69 FL 70
>At1g79650.2 68414.m09288 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 365
Score = 39.1 bits (87), Expect = 0.002
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +2
Query: 38 RASTITLEVEPSDTIENVKAKIQDKEG---IPPNQQRLIFAGKQLEDGRTLSDYNIQKES 208
+ S + V PSDTI VK I+D +G P QQ LI GK L+D +L + + +E
Sbjct: 9 KGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEG 68
Query: 209 TL 214
L
Sbjct: 69 FL 70
>At1g79650.1 68414.m09287 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 371
Score = 39.1 bits (87), Expect = 0.002
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +2
Query: 38 RASTITLEVEPSDTIENVKAKIQDKEG---IPPNQQRLIFAGKQLEDGRTLSDYNIQKES 208
+ S + V PSDTI VK I+D +G P QQ LI GK L+D +L + + +E
Sbjct: 9 KGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEG 68
Query: 209 TL 214
L
Sbjct: 69 FL 70
>At1g16190.1 68414.m01939 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota]
Length = 368
Score = 39.1 bits (87), Expect = 0.002
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +2
Query: 38 RASTITLEVEPSDTIENVKAKIQD---KEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKES 208
+ S + V P+DTI VK I+D K+ P QQ LI GK L+D TL + + +E
Sbjct: 9 KGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVTEEG 68
Query: 209 TL 214
L
Sbjct: 69 FL 70
>At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding
bromodomain-containing protein low similarity to
SP|P51123 Transcription initiation factor TFIID 230 kDa
subunit {Drosophila melanogaster}; contains Pfam
profiles: PF00439 bromodomain, PF00240: Ubiquitin family
Length = 1700
Score = 37.1 bits (82), Expect = 0.009
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +2
Query: 56 LEVEPSDTIENVKAKIQDKEGIPPNQQ-RLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
L V +++ ++KAK K + ++ + GK+LED ++L++ N+Q S +HL+
Sbjct: 514 LTVGREESVSSLKAKASRKLDFKETEAVKMFYMGKELEDEKSLAEQNVQPNSLVHLL 570
>At2g46500.2 68415.m05791 phosphatidylinositol 3- and 4-kinase
family protein / ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 566
Score = 36.7 bits (81), Expect = 0.012
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +2
Query: 62 VEPSDTIENVKAKIQDKEG--IPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
VE I VK +I K G + P++Q +++ G++LED ++D +S LHL+
Sbjct: 127 VERGRNIGYVKKQISKKRGDFVDPDEQEILYEGEKLEDQSLINDICRNDDSVLHLL 182
>At2g46500.1 68415.m05790 phosphatidylinositol 3- and 4-kinase
family protein / ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 566
Score = 36.7 bits (81), Expect = 0.012
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +2
Query: 62 VEPSDTIENVKAKIQDKEG--IPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
VE I VK +I K G + P++Q +++ G++LED ++D +S LHL+
Sbjct: 127 VERGRNIGYVKKQISKKRGDFVDPDEQEILYEGEKLEDQSLINDICRNDDSVLHLL 182
>At4g05230.1 68417.m00789 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 206
Score = 35.9 bits (79), Expect = 0.021
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = +2
Query: 44 STITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 220
ST +E+ DT+ +K KI+ + IP ++Q L+F G L+D + I S + L
Sbjct: 11 STFEIELGYWDTVLEIKQKIEKYQRIPVSKQTLLFQGNVLQDHLDIEQCVILNHSRIQL 69
>At4g03360.1 68417.m00458 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 284
Score = 35.9 bits (79), Expect = 0.021
Identities = 20/59 (33%), Positives = 33/59 (55%)
Frame = +2
Query: 44 STITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 220
S+ T++V DT+ +K KI+ +G P ++Q LIF K L+D + I+ S + L
Sbjct: 12 SSFTIDVSFWDTVLMIKRKIEMTQGTPVSKQILIFKRKVLQDHLNMFGCQIRHNSRILL 70
>At4g02950.1 68417.m00402 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 318
Score = 35.9 bits (79), Expect = 0.021
Identities = 20/59 (33%), Positives = 33/59 (55%)
Frame = +2
Query: 44 STITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 220
S+ T++V DT+ +K KI+ +G P ++Q LIF K L+D + I+ S + L
Sbjct: 46 SSFTIDVSFWDTVLMIKRKIEMTQGTPVSKQILIFKRKVLQDHLNMFGCQIRHNSRILL 104
>At5g14360.1 68418.m01678 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 163
Score = 34.7 bits (76), Expect = 0.048
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 56 LEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLED 169
L +E + T +K + G+ P QQRL+F GK+ ED
Sbjct: 83 LSIEATSTFGELKMVLSLLTGLEPKQQRLVFKGKERED 120
>At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC13
[Arabidopsis thaliana] gi|21105767|gb|AAM34782; contains
Pfam domains, PF00439: Bromodomain and PF00240:
Ubiquitin family
Length = 1919
Score = 33.9 bits (74), Expect = 0.084
Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +2
Query: 56 LEVEPSDTIENVKAKIQDKEGIPPNQQ-RLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
L V +++ +++AK K + ++ + GK+L+D ++L+ N+Q S +HL+
Sbjct: 675 LHVGIEESVSSLRAKASRKLDFKETEAVKMFYKGKELDDEKSLAAQNVQPNSLVHLI 731
>At4g01000.1 68417.m00135 ubiquitin family protein low similarity to
SP|P13117 Ubiquitin. {Neurospora crassa}; contains Pfam
profile PF00240: Ubiquitin family
Length = 415
Score = 33.5 bits (73), Expect = 0.11
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = +2
Query: 83 ENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
E +K +I ++ IP + QRLI G Q+ DG +S Q ++T++LV
Sbjct: 33 EQIKQRIFEQTKIPTHLQRLISGGYQISDGSAIS----QPDATVNLV 75
>At4g05310.1 68417.m00809 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 415
Score = 31.9 bits (69), Expect = 0.34
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +2
Query: 44 STITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAG 154
S+ +EVE +DT+ VK KI+ + +P ++Q LI G
Sbjct: 11 SSFEIEVERTDTLLVVKQKIEKSQRVPVSKQTLIVDG 47
>At2g12550.1 68415.m01357 ubiquitin-associated (UBA)/TS-N
domain-containing protein low similarity to NUB1
(NEDD8-interacting protein) [Homo sapiens] GI:13383476;
contains Pfam profile PF00627: UBA/TS-N domain
Length = 562
Score = 31.5 bits (68), Expect = 0.45
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Frame = +2
Query: 56 LEVEPSD-TIENVKAKIQDKEGIPPNQQRLIFAGKQLEDG----RTLSDYNIQKESTL 214
LEVE + T+ ++ ++ + G+ P +LIFAGK L+D TLS I++ S +
Sbjct: 14 LEVELENWTLNMLRDEVAKRSGLDPESIKLIFAGKILKDDGDATLTLSQLGIKENSKI 71
>At5g24240.1 68418.m02852 phosphatidylinositol 3- and 4-kinase
family protein / ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain, Pfam profile
PF00454: Phosphatidylinositol 3- and 4-kinase
Length = 574
Score = 30.7 bits (66), Expect = 0.78
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +2
Query: 56 LEVEPSDTIENVKAKIQDKE---GIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
L VE S + VK +I KE GIP + + L G++L+D R ++D ++ +HL+
Sbjct: 123 LVVERSRNVGYVKQQIASKEKELGIPRDHE-LTLDGEELDDQRLITDLCQNGDNVIHLL 180
>At5g40630.1 68418.m04932 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 165
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 56 LEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLED 169
+ ++ + T +K I GI +QRL+F GK+ ED
Sbjct: 93 ISIDANSTFGELKMMIAIVSGIEAKEQRLLFRGKERED 130
>At4g05270.1 68417.m00797 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 129
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2
Query: 44 STITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAG 154
S+ LEV+ DT+ VK KI+ + IP ++Q LI G
Sbjct: 11 SSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDG 47
>At4g05250.1 68417.m00793 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 318
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 74 DTIENVKAKIQDKEGIPPNQQRLIFAGKQLED 169
DT+ +K KI+ + IP ++Q LIF G L+D
Sbjct: 21 DTMLEIKEKIEKYQCIPVSKQTLIFQGVVLQD 52
>At3g14130.1 68416.m01787 (S)-2-hydroxy-acid oxidase, peroxisomal,
putative / glycolate oxidase, putative / short chain
alpha-hydroxy acid oxidase, putative similar to Chain A,
Glycolate Oxidase (E.C.1.1.3.15) Mutant With Tyr 24
Replaced By Phe (Y24f) gi|999542
Length = 363
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -2
Query: 223 HQVEGGF--LLDIVVREGTSIFQLLSSKDQPLLIGRDSLFVL 104
H V+G LLD VR GT +F+ L+ Q +LIGR ++ L
Sbjct: 272 HAVKGRIPVLLDGGVRRGTDVFKALALGAQAVLIGRPIVYGL 313
>At1g22050.1 68414.m02758 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 119
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 7/46 (15%)
Frame = +2
Query: 71 SDTIENVKAKI-----QDKEGIPP--NQQRLIFAGKQLEDGRTLSD 187
S T+ ++K K+ +DKE P N +LI AGK LE+ RTL++
Sbjct: 28 SMTVSSLKEKLISQWPKDKENTPKTVNDMKLINAGKILENNRTLAE 73
>At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein / ubiquitin family protein
similar to SP|Q15459 Splicing factor 3 subunit 1
(Spliceosome associated protein 114) {Homo sapiens};
contains Pfam profiles PF00240: Ubiquitin family,
PF01805: Surp module
Length = 785
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +2
Query: 71 SDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 196
S+ + ++K KI + IP N+Q+L L+D +L+ YN+
Sbjct: 726 SENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNV 767
>At1g11970.1 68414.m01383 hypothetical protein
Length = 99
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 50 ITLEVEPSDTIENVKAKIQDKEGIP 124
I +E++P D IE +K I+++ GIP
Sbjct: 55 IDIEIDPMDKIEQIKEGIEEEIGIP 79
>At3g14150.1 68416.m01789 (S)-2-hydroxy-acid oxidase, peroxisomal,
putative / glycolate oxidase, putative / short chain
alpha-hydroxy acid oxidase, putative similar to
(S)-2-hydroxy-acid oxidase, peroxisomal (Glycolate
oxidase, GOX) (Short chain alpha-hydroxy acid oxidase)
[Spinacia oleracea] SWISS-PROT:P05414
Length = 363
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -2
Query: 202 LLDIVVREGTSIFQLLSSKDQPLLIGRDSLFVL 104
LLD VR GT +F+ L+ Q +LIGR ++ L
Sbjct: 281 LLDGGVRRGTDVFKALALGAQAVLIGRPIIYGL 313
>At1g47680.1 68414.m05297 hypothetical protein
Length = 104
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 65 EPSDTIENVKAKIQDKEG-IPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 220
E D +E++ K ++ G + +L +G+Q+ R L DY +Q E+T L
Sbjct: 31 EEDDGMEDITKKYHNEVGEVVQGVPQLRRSGRQISQSRYLEDYVMQSETTYGL 83
>At5g12280.1 68418.m01444 hypothetical protein
Length = 419
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 71 SDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 196
S+ + ++K KI + P N+Q+L L+D +L+ YN+
Sbjct: 367 SENVASLKEKISGEIQFPTNKQKLRGKAGFLKDNTSLAHYNV 408
>At1g67700.2 68414.m07726 expressed protein
Length = 231
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = -3
Query: 99 LAFTFSMVSDGSTSRVMVLAREGTLRKFAY 10
L + S+++ G+T+++MV A++ L K+ Y
Sbjct: 94 LWYPLSIIAGGTTAKIMVAAKDNLLGKYIY 123
>At1g67700.1 68414.m07725 expressed protein
Length = 230
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = -3
Query: 99 LAFTFSMVSDGSTSRVMVLAREGTLRKFAY 10
L + S+++ G+T+++MV A++ L K+ Y
Sbjct: 94 LWYPLSIIAGGTTAKIMVAAKDNLLGKYIY 123
>At4g18360.1 68417.m02723 (S)-2-hydroxy-acid oxidase, peroxisomal,
putative / glycolate oxidase, putative / short chain
alpha-hydroxy acid oxidase, putative similar to
(S)-2-hydroxy-acid oxidase, peroxisomal (Glycolate
oxidase, GOX) (Short chain alpha-hydroxy acid oxidase)
[Spinacia oleracea] SWISS-PROT:P05414
Length = 368
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 199 LDIVVREGTSIFQLLSSKDQPLLIGRDSLFVL 104
LD VR GT +F+ L+ + +GR SLF L
Sbjct: 284 LDGGVRRGTDVFKALALGASGVFVGRPSLFSL 315
>At2g20420.1 68415.m02383 succinyl-CoA ligase [GDP-forming]
beta-chain, mitochondrial, putative / succinyl-CoA
synthetase, beta chain, putative / SCS-beta, putative
identical to SP|O82662 Succinyl-CoA ligase [GDP-forming]
beta-chain, mitochondrial precursor (EC 6.2.1.4)
(Succinyl-CoA synthetase, beta chain) (SCS- beta)
{Arabidopsis thaliana}; similar to SP|O97580
Succinyl-CoA ligase [ADP-forming] beta-chain,
mitochondrial precursor (EC 6.2.1.5) {Sus scrofa};
contains Pfam profiles PF00549: CoA-ligase, PF02222:
ATP-grasp domain
Length = 421
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 71 SDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 223
+ ++E VK IQD + PN+ L+ + L GR L + + +H+V
Sbjct: 51 ASSLEEVKKAIQD---VFPNESELVVKSQILAGGRGLGTFKSGLKGGVHIV 98
>At1g78020.1 68414.m09092 senescence-associated protein-related
similar to senescence-associated protein SAG102
(GI:22331931) [Arabidopsis thaliana]
Length = 162
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 111 KRESLPINRG*SLLESSWKMDVPSRTTISRRNPPS 215
KR+ PINR SL E + +++PS + S + P+
Sbjct: 5 KRQRPPINRTTSLSEIKFDLNLPSESEPSNQQKPT 39
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,786,444
Number of Sequences: 28952
Number of extensions: 225967
Number of successful extensions: 733
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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