Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0053
(800 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55375-5|AAC69045.1| 126|Caenorhabditis elegans Profilin protei... 91 1e-18
AY530910-1|AAT01435.1| 126|Caenorhabditis elegans profilin-3 pr... 91 1e-18
AY530908-1|AAT01433.1| 132|Caenorhabditis elegans profilin-1 pr... 71 1e-12
AL034393-15|CAA22318.1| 132|Caenorhabditis elegans Hypothetical... 71 1e-12
U40941-2|AAA81708.3| 131|Caenorhabditis elegans Profilin protei... 67 2e-11
AY530909-1|AAT01434.1| 131|Caenorhabditis elegans profilin-2 pr... 67 2e-11
>U55375-5|AAC69045.1| 126|Caenorhabditis elegans Profilin protein 3
protein.
Length = 126
Score = 90.6 bits (215), Expect = 1e-18
Identities = 46/126 (36%), Positives = 68/126 (53%)
Frame = +2
Query: 50 MSWQDYVDKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGG 229
MSW D ++ L+ S V+KAAI G DG VWAKS+ F IS +E F + L G
Sbjct: 1 MSWSDIINNNLIGSGNVSKAAILGFDGAVWAKSDNFNISVEEAVAAGKAFTSLDALLGTG 60
Query: 230 VTIAGTRYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEY 409
+ + G +++ L+ + I K G G KT QAV+IS+YE+ +QP+ + L +Y
Sbjct: 61 LRLEGQKFLVLNADNDRIIGKQGGSGFFIYKTIQAVIISIYEKGLQPEMCSKTTGALADY 120
Query: 410 LITCGY 427
+ Y
Sbjct: 121 FRSIKY 126
>AY530910-1|AAT01435.1| 126|Caenorhabditis elegans profilin-3
protein.
Length = 126
Score = 90.6 bits (215), Expect = 1e-18
Identities = 46/126 (36%), Positives = 68/126 (53%)
Frame = +2
Query: 50 MSWQDYVDKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGG 229
MSW D ++ L+ S V+KAAI G DG VWAKS+ F IS +E F + L G
Sbjct: 1 MSWSDIINNNLIGSGNVSKAAILGFDGAVWAKSDNFNISVEEAVAAGKAFTSLDALLGTG 60
Query: 230 VTIAGTRYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEY 409
+ + G +++ L+ + I K G G KT QAV+IS+YE+ +QP+ + L +Y
Sbjct: 61 LRLEGQKFLVLNADNDRIIGKQGGSGFFIYKTIQAVIISIYEKGLQPEMCSKTTGALADY 120
Query: 410 LITCGY 427
+ Y
Sbjct: 121 FRSIKY 126
>AY530908-1|AAT01433.1| 132|Caenorhabditis elegans profilin-1
protein.
Length = 132
Score = 70.9 bits (166), Expect = 1e-12
Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 5/129 (3%)
Frame = +2
Query: 56 WQDYVDKQLMASRCVTKAAIAGH-DGNVWAKSEG---FEISKDEVAKIVAGFENESLLTS 223
W Y+D A+ + + AI G DG+VWA++E F+ S++E+ VA F + + + +
Sbjct: 4 WNAYIDTMTAAAPSIKRCAIVGAADGSVWARTEADNVFKASEEELKTFVALFNDVTQVPA 63
Query: 224 GGVTIAGTRYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQ-PQQAASVVEKL 400
G I G Y+ + +I K G +KT+ AV+I++YE P + Q VE +
Sbjct: 64 KGADIEGVHYVVPRTEESLIFGKKENTGFFAVKTKSAVLIAVYEGPNEVAAQVRKAVESM 123
Query: 401 GEYLITCGY 427
YL GY
Sbjct: 124 QTYLNNAGY 132
>AL034393-15|CAA22318.1| 132|Caenorhabditis elegans Hypothetical
protein Y18D10A.20 protein.
Length = 132
Score = 70.9 bits (166), Expect = 1e-12
Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 5/129 (3%)
Frame = +2
Query: 56 WQDYVDKQLMASRCVTKAAIAGH-DGNVWAKSEG---FEISKDEVAKIVAGFENESLLTS 223
W Y+D A+ + + AI G DG+VWA++E F+ S++E+ VA F + + + +
Sbjct: 4 WNAYIDTMTAAAPSIKRCAIVGAADGSVWARTEADNVFKASEEELKTFVALFNDVTQVPA 63
Query: 224 GGVTIAGTRYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYEEPIQ-PQQAASVVEKL 400
G I G Y+ + +I K G +KT+ AV+I++YE P + Q VE +
Sbjct: 64 KGADIEGVHYVVPRTEESLIFGKKENTGFFAVKTKSAVLIAVYEGPNEVAAQVRKAVESM 123
Query: 401 GEYLITCGY 427
YL GY
Sbjct: 124 QTYLNNAGY 132
>U40941-2|AAA81708.3| 131|Caenorhabditis elegans Profilin protein 2
protein.
Length = 131
Score = 66.9 bits (156), Expect = 2e-11
Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 4/128 (3%)
Frame = +2
Query: 56 WQDYVDKQLMASRCVTKAAIAGHDGNVWAKS---EGFEISKDEVAKIVAGFENESLLTSG 226
W DY+ S + +AAI G DG+VWA+S F ++ E+ + A F + + +
Sbjct: 4 WDDYIKLLFGKSPAIKRAAIIGSDGSVWARSGDANAFRATEVELKRFAALFNDINSVPGT 63
Query: 227 GVTIAGTRYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYE-EPIQPQQAASVVEKLG 403
G + YI + +I K + G KT QA+VI++YE + Q + VE +
Sbjct: 64 GADLEEIHYIVPRVEEKLIFGKKEQTGFFAAKTNQAIVIAMYEGDNAQSASVRAGVEYIA 123
Query: 404 EYLITCGY 427
+YL + GY
Sbjct: 124 QYLASSGY 131
>AY530909-1|AAT01434.1| 131|Caenorhabditis elegans profilin-2
protein.
Length = 131
Score = 66.9 bits (156), Expect = 2e-11
Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 4/128 (3%)
Frame = +2
Query: 56 WQDYVDKQLMASRCVTKAAIAGHDGNVWAKS---EGFEISKDEVAKIVAGFENESLLTSG 226
W DY+ S + +AAI G DG+VWA+S F ++ E+ + A F + + +
Sbjct: 4 WDDYIKLLFGKSPAIKRAAIIGSDGSVWARSGDANAFRATEVELKRFAALFNDINSVPGT 63
Query: 227 GVTIAGTRYIYLSGTDHIIRAKLGKVGVHCMKTQQAVVISLYE-EPIQPQQAASVVEKLG 403
G + YI + +I K + G KT QA+VI++YE + Q + VE +
Sbjct: 64 GADLEEIHYIVPRVEEKLIFGKKEQTGFFAAKTNQAIVIAMYEGDNAQSASVRAGVEYIA 123
Query: 404 EYLITCGY 427
+YL + GY
Sbjct: 124 QYLASSGY 131
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,882,606
Number of Sequences: 27780
Number of extensions: 374305
Number of successful extensions: 832
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -