Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0052
         (600 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24065.1 68416.m03022 expressed protein ; expression supporte...    28   5.4  
At2g16990.1 68415.m01959 expressed protein                             27   7.2  
At2g06860.1 68415.m00768 Ulp1 protease family protein contains P...    27   9.5  

>At3g24065.1 68416.m03022 expressed protein ; expression supported
           by MPSS
          Length = 135

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/64 (25%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
 Frame = -1

Query: 372 LINVSLPYFGD-TFTH-IMTIRIKSTPKALDSNPYYWKCFTSLI*K*NGVSMTAKSYISK 199
           L++++L +    +FT  + T+++ +   ALDS+P+  +C +S +   + V    ++Y+  
Sbjct: 11  LVSLALAFTSSLSFTAPVFTVKVTNN-LALDSHPFTIRCTSSKLDTSSQVLFRGETYVLM 69

Query: 198 YDTE 187
           +DT+
Sbjct: 70  FDTD 73


>At2g16990.1 68415.m01959 expressed protein
          Length = 456

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +2

Query: 278 GLLSKALGVDFILIVIICVNVSPKYGSDTLINLGYCL 388
           G    A+G+  ++++ +  N+S +YG  T++ L  CL
Sbjct: 53  GFQQVAIGMGTMIMMPVIGNLSDRYGIKTILTLPMCL 89


>At2g06860.1 68415.m00768 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 938

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/49 (36%), Positives = 21/49 (42%)
 Frame = +1

Query: 382 LSXVSGVNVSPKNTGDTRIXINYDYYN*FKHSTFKSFXYCGCDXMINVD 528
           +S V+G   SPK +GD      Y YY    H TF     C      NVD
Sbjct: 483 ISSVTGAVTSPKLSGDNEEVSCYPYYQ--NHYTF-IVVQCSQQTTTNVD 528


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,078,698
Number of Sequences: 28952
Number of extensions: 168873
Number of successful extensions: 315
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)