Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0051
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25257| Best HMM Match : Pkinase (HMM E-Value=4e-10)                 36   0.038
SB_58796| Best HMM Match : TIG (HMM E-Value=6.3e-22)                   31   0.81 
SB_45929| Best HMM Match : ANF_receptor (HMM E-Value=4.8e-24)          28   5.7  

>SB_25257| Best HMM Match : Pkinase (HMM E-Value=4e-10)
          Length = 892

 Score = 35.5 bits (78), Expect = 0.038
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +3

Query: 546 VPHHFXDPSTAPLRKLTXYLXKTYRH 623
           +P  F DP  APLRKL+  L KTY+H
Sbjct: 311 IPTKFRDPCGAPLRKLSVDLIKTYKH 336


>SB_58796| Best HMM Match : TIG (HMM E-Value=6.3e-22)
          Length = 1709

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +1

Query: 166  ITFIRSV*KIKSNSNEVLILWTMIIAIILKDVFFRVNKMLILKLGHHVERXLTKW 330
            + F+R+V   K+ S +  ILW ++  +I K V     K+L+ +     E+ LT W
Sbjct: 1246 LIFVRTVESQKTFSMKDRILWQLLCDLIRKSVAQSHPKLLLRRTESVAEKLLTNW 1300


>SB_45929| Best HMM Match : ANF_receptor (HMM E-Value=4.8e-24)
          Length = 1001

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 11  PYRRTLSTYQLRHVYKHCFTTITF 82
           PYR+T  TY  R++Y+  F  + F
Sbjct: 459 PYRKTAVTYGTRYIYRALFGALVF 482


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,931,879
Number of Sequences: 59808
Number of extensions: 275641
Number of successful extensions: 453
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)