Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0051
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69885-5|CAA93756.2|  882|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AY064464-1|AAL40874.1|  882|Caenorhabditis elegans minibrain kin...    29   2.2  
Z48009-7|CAA88083.1|  329|Caenorhabditis elegans Hypothetical pr...    28   5.0  

>Z69885-5|CAA93756.2|  882|Caenorhabditis elegans Hypothetical
           protein T04C10.1 protein.
          Length = 882

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = +3

Query: 423 GGMPEXAGGERRXVPLYGRXGAEXQLXXMXXPSNXXAXHXXVPHHFXDPSTAPLRKLTXY 602
           G  PE    ++R +  +        +  +  P    +    +   F +P  AP+RKLT  
Sbjct: 138 GMPPEKQAAKKRNIGQFSTDTVPAGIGMIGIPFESTSKPLQI-QQFRNPQDAPVRKLTSD 196

Query: 603 LXKTYR 620
           L KTY+
Sbjct: 197 LIKTYK 202


>AY064464-1|AAL40874.1|  882|Caenorhabditis elegans minibrain kinase
           protein.
          Length = 882

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = +3

Query: 423 GGMPEXAGGERRXVPLYGRXGAEXQLXXMXXPSNXXAXHXXVPHHFXDPSTAPLRKLTXY 602
           G  PE    ++R +  +        +  +  P    +    +   F +P  AP+RKLT  
Sbjct: 138 GMPPEKQAAKKRNIGQFSTDTVPAGIGMIGIPFESTSKPLQI-QQFRNPQDAPVRKLTSD 196

Query: 603 LXKTYR 620
           L KTY+
Sbjct: 197 LIKTYK 202


>Z48009-7|CAA88083.1|  329|Caenorhabditis elegans Hypothetical
           protein AH6.10 protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 299 PSFNINILLTRKNTSFRIIAIIMVHRISTSFEFDLIF 189
           P FN+  +L+   T F +I  I + R +  FEF+  F
Sbjct: 184 PRFNLFSILSTVLTLFNLIVSIFIQRYNKRFEFETRF 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,653,647
Number of Sequences: 27780
Number of extensions: 197316
Number of successful extensions: 334
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)