Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0051
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46600.1 68418.m05737 expressed protein contains Pfam profile...    28   4.7  
At1g06780.1 68414.m00721 glycosyl transferase family 8 protein c...    27   8.2  

>At5g46600.1 68418.m05737 expressed protein contains Pfam profile
           PF01027: Uncharacterized protein family UPF0005;
           expression supported by MPSS
          Length = 539

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 138 LSMIGKWSPAETRPCSRHPNVIVVK 64
           L+M  KW P  TR C++ P+   +K
Sbjct: 278 LAMYAKWEPRHTRRCNKFPSQQYIK 302


>At1g06780.1 68414.m00721 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 589

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
 Frame = +1

Query: 193 IKSNSNEVLILWTMIIA-IILKDVFFRVNKMLILKLGHHVERXLTK-WNV 336
           +K NSN+   + T+  A   L D+F  +NKM++L     V+R L++ W++
Sbjct: 377 MKQNSNDPRFISTLNHARFYLPDIFPGLNKMVLLDHDVVVQRDLSRLWSI 426


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,813,323
Number of Sequences: 28952
Number of extensions: 177772
Number of successful extensions: 312
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)