Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0050
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 196 3e-51
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 30 0.30
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 27 2.1
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 2.8
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 4.8
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 26 4.8
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.4
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S... 25 6.4
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual 25 8.5
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 196 bits (477), Expect = 3e-51
Identities = 94/179 (52%), Positives = 119/179 (66%)
Frame = +2
Query: 23 LVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEI 202
L EVR+ ++ N + APARP AIAPL V +PA NTG+ P KTSFFQAL IPTKI++GTIEI
Sbjct: 93 LKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEI 152
Query: 203 INDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAK 382
+DVH++ KVG SEATLLNMLNISPF+YG+ V +YD G +F+PEILD+ EDL
Sbjct: 153 TSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQGNVFSPEILDVSEEDLIGH 212
Query: 383 FQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXXKEFIKDPS 559
+ + + A+SL YPTI S HS+ N +KNL+ K F+ DPS
Sbjct: 213 LLSAASIITAISLGANYPTILSVMHSVVNAYKNLVAVSLATEYTFEGTEQTKAFLADPS 271
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 29.9 bits (64), Expect = 0.30
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = -3
Query: 550 LNELLDGGSFFKLNLCDSSDGQKVLETIGDGMRG*SNSWVSNSQRKSSYISNSSLELGTE 371
L L+ G S+ SSDG + + D ++ + SWV ++R S IS S E+ +
Sbjct: 82 LRRLIQGNSYRIFGTGKSSDGLATYKLLLDELKSLTKSWVM-AKRFSDAISGSDSEVFED 140
Query: 370 ILWFDVQNF 344
FD++ F
Sbjct: 141 ---FDIEAF 146
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -1
Query: 204 MISIVPFEILVGMERAWKKEVFSGPRPVLWAGMTTDNGAMAP 79
+IS P + L+G+ AW E S R + T+ +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = -3
Query: 553 VLNELLDGGSFFKLNLCDSSDGQKVLETIGDGMRG*SNSWVSNSQRKSSYISNSSLELGT 374
V L D G + +C+ +D ++++T + +++S KS + N EL T
Sbjct: 1016 VNRRLADAGIASRCEICEINDKNEIVKTRSQRIHSKKKAFLSLVPDKSIGVINRYKELAT 1075
Query: 373 EI 368
E+
Sbjct: 1076 EL 1077
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = +3
Query: 42 NCWRTKSRLQLVPVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLKS 203
+ +R++ R L+ P +S PP TPA+ + + ++P+ R++L++
Sbjct: 79 SAFRSRYRGSLLNRNSPSLRSLSPPATPATPRSRIEGESQTSAIPQTDRLILEN 132
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 111 PPTTPASVQRKPLSSKLFPSLPKFQRVLLKSST 209
PPTT + + +P FQ++LLK ST
Sbjct: 309 PPTTRDPIYLGTMLRLFAEKIPVFQKILLKPST 341
>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 602
Score = 25.4 bits (53), Expect = 6.4
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 87 LPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLK 200
L HC + P A Q KPL S+ + SL KF+ LK
Sbjct: 532 LSHCFLNDPK---AFAQLKPLISQFYESLHKFKNFHLK 566
>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -3
Query: 211 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGNDD*QWG 89
IVD NS + R + L ++G L+ +GV GG + ++G
Sbjct: 101 IVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYG 141
>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 381 LARRSSGLMSRISGAKIVPESYTCLTTR 298
LAR SS SGAK+VP+ + +T +
Sbjct: 276 LARVSSSFGRPTSGAKVVPQIHNTVTVQ 303
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,507,251
Number of Sequences: 5004
Number of extensions: 53388
Number of successful extensions: 150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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