Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0050
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 213 9e-56
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 213 9e-56
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 212 2e-55
06_01_0080 + 644021-645463 30 1.6
03_02_0966 + 12783515-12783901 30 1.6
06_01_0349 + 2529279-2530446,2532232-2533036,2533066-2533106,253... 29 2.2
01_01_0703 - 5425713-5425862,5426302-5426451,5426853-5426964,542... 29 2.2
07_01_0115 + 851505-852368,852611-852730,853000-853020,853253-85... 29 2.8
03_03_0258 - 15905847-15905990,15906088-15906244,15906374-159065... 29 2.8
06_03_1442 - 30172595-30172606,30172607-30172684,30173034-301734... 29 3.8
06_03_1439 - 30157110-30157121,30157122-30157199,30157549-301579... 29 3.8
06_03_1427 - 30090464-30090475,30090476-30090553,30090903-300913... 29 3.8
06_03_1422 + 30058936-30058975,30059057-30059233,30060848-300610... 29 3.8
06_01_0486 - 3455030-3455770 29 3.8
04_04_1641 + 34993807-34994589,34994924-34995022,34995521-349956... 29 3.8
04_03_0899 + 20662671-20662818,20663655-20663959,20664080-206642... 29 3.8
01_06_1014 - 33810112-33811995 29 3.8
11_06_0266 - 21791757-21792982,21793154-21793178 28 5.0
12_01_0639 + 5383967-5385951,5386973-5387066,5387410-5387841,538... 27 8.7
06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137 27 8.7
03_05_0907 + 28678909-28679253 27 8.7
02_04_0571 - 23963088-23963174,23963265-23963512,23963913-239639... 27 8.7
01_06_1676 - 39084928-39085016,39085462-39085555,39085664-390857... 27 8.7
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 213 bits (520), Expect = 9e-56
Identities = 101/180 (56%), Positives = 131/180 (72%)
Frame = +2
Query: 23 LVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEI 202
L EVR+++ + KV APAR G +AP+ VV+P NTGL P +TSFFQ L+IPTKI+KGT+EI
Sbjct: 98 LKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEI 157
Query: 203 INDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAK 382
I V ++K GDKVG+SE+ LL L I PFSYGLV+ VYDSG++F+PE+LD+ EDL K
Sbjct: 158 ITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEEDLMEK 217
Query: 383 FQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXXKEFIKDPSK 562
F +GV+ VA++SLAI YPTIA+APH NG+KN+L KE++KDPSK
Sbjct: 218 FASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSK 277
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 213 bits (520), Expect = 9e-56
Identities = 101/180 (56%), Positives = 131/180 (72%)
Frame = +2
Query: 23 LVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEI 202
L EVR+++ + KV APAR G +AP+ VV+P NTGL P +TSFFQ L+IPTKI+KGT+EI
Sbjct: 98 LKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEI 157
Query: 203 INDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAK 382
I V ++K GDKVG+SE+ LL L I PFSYGLV+ VYDSG++F+PE+LD+ EDL K
Sbjct: 158 ITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEEDLMEK 217
Query: 383 FQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXXKEFIKDPSK 562
F +GV+ VA++SLAI YPTIA+APH NG+KN+L KE++KDPSK
Sbjct: 218 FASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSK 277
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 212 bits (517), Expect = 2e-55
Identities = 100/180 (55%), Positives = 131/180 (72%)
Frame = +2
Query: 23 LVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEI 202
L EVR+++ + KV APAR G +AP+ VV+P NTGL P +TSFFQ L+IPTKI+KGT+EI
Sbjct: 98 LKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEI 157
Query: 203 INDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAK 382
I V ++K GDKVG+SE+ LL L I PFSYGLV+ VYDSG++F+PE+LD+ +DL K
Sbjct: 158 ITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEDDLMEK 217
Query: 383 FQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXXKEFIKDPSK 562
F +GV+ VA++SLAI YPTIA+APH NG+KN+L KE++KDPSK
Sbjct: 218 FASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSK 277
>06_01_0080 + 644021-645463
Length = 480
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 211 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGND 104
I+D N N R K++EERG L+ GV GG +
Sbjct: 100 IIDGGNEWYENTERREKAMEERGLLYLGMGVSGGEE 135
>03_02_0966 + 12783515-12783901
Length = 128
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 389 AGVANVAALSLAIGYPTIASAPHSIANGFKNLL 487
AG+A VAA++ A+ P +A A +++ KN L
Sbjct: 67 AGIAAVAAVAAALAVPEVAEAAPALSPSLKNFL 99
>06_01_0349 +
2529279-2530446,2532232-2533036,2533066-2533106,
2533219-2533424
Length = 739
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 27 LRSVTNCWRTKSRLQLVPVPLP 92
LR+V WR+ +RLQ +P PLP
Sbjct: 428 LRAVCRPWRSNARLQPLPPPLP 449
>01_01_0703 -
5425713-5425862,5426302-5426451,5426853-5426964,
5427120-5427481,5427578-5427712,5427812-5427889,
5427989-5428174,5428266-5428452,5428552-5428658,
5428732-5428806,5428885-5429040,5429165-5429437,
5429548-5429643,5429724-5429814,5429883-5430385
Length = 886
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/51 (27%), Positives = 31/51 (60%)
Frame = +2
Query: 197 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEI 349
E++ +++P D VG S +++ +++ P+S VV+ +Y+S + A +I
Sbjct: 346 EMLPSGFLIRPSD-VGGSVIHIVDHMDLEPWSVPEVVRPLYESSAMVAQKI 395
>07_01_0115 +
851505-852368,852611-852730,853000-853020,853253-853369,
853466-853555,853730-853837,853897-853932,853933-854022
Length = 481
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +2
Query: 362 PEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFK 478
PE RA F AG A V A +P A+A +S GF+
Sbjct: 35 PEKKRASFAAGAAAVRAKVCDARWPASAAAANSAPYGFR 73
>03_03_0258 -
15905847-15905990,15906088-15906244,15906374-15906504,
15906991-15907126,15907193-15907464,15907874-15908169,
15908279-15908646,15908922-15908987,15909064-15909129,
15909226-15909297,15909391-15909459,15909549-15909620,
15909708-15909776,15909874-15909945,15910046-15910178,
15911223-15911361
Length = 753
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -1
Query: 327 PESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSL 205
PE LT RP +G+ FN LR ++ +PT G + S+
Sbjct: 358 PEKNEPLTLRPIASGK-FNQLRTISIISPTAKEGLQKTVSM 397
>06_03_1442 -
30172595-30172606,30172607-30172684,30173034-30173435,
30173503-30173577,30173667-30173822,30173952-30174143,
30174202-30174208,30175866-30175918
Length = 324
Score = 28.7 bits (61), Expect = 3.8
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = +2
Query: 197 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEI--LDIKPED 370
E++ +++P D G S +++ +++ P+S VV+ +Y+S + A +I K +
Sbjct: 109 EMLPSGFLIRPSDG-GGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQKISMASCKIQS 167
Query: 371 LRAKFQAGVANVAALSLAIGYPTIASAPHSIA 466
LR Q VA S+ G+ +A H+++
Sbjct: 168 LRCLRQ--VAYKDTRSVITGWGRKLAALHALS 197
>06_03_1439 -
30157110-30157121,30157122-30157199,30157549-30157950,
30158018-30158092,30158182-30158337,30158467-30158658,
30158717-30158723,30160381-30160433
Length = 324
Score = 28.7 bits (61), Expect = 3.8
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = +2
Query: 197 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEI--LDIKPED 370
E++ +++P D G S +++ +++ P+S VV+ +Y+S + A +I K +
Sbjct: 109 EMLPSGFLIRPSDG-GGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQKISMASCKIQS 167
Query: 371 LRAKFQAGVANVAALSLAIGYPTIASAPHSIA 466
LR Q VA S+ G+ +A H+++
Sbjct: 168 LRCLRQ--VAYKDTRSVITGWGRKLAALHALS 197
>06_03_1427 -
30090464-30090475,30090476-30090553,30090903-30091304,
30091372-30091446,30091536-30091691,30091821-30092012,
30093735-30093908,30094966-30095123,30096738-30096914,
30096996-30097035
Length = 487
Score = 28.7 bits (61), Expect = 3.8
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = +2
Query: 197 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEI--LDIKPED 370
E++ +++P D G S +++ +++ P+S VV+ +Y+S + A +I K +
Sbjct: 272 EMLPSGFLIRPSDG-GGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQKISMASCKIQS 330
Query: 371 LRAKFQAGVANVAALSLAIGYPTIASAPHSIA 466
LR Q VA S+ G+ +A H+++
Sbjct: 331 LRCLRQ--VAYKDTRSVITGWGRKLAALHALS 360
>06_03_1422 +
30058936-30058975,30059057-30059233,30060848-30061005,
30062063-30062236,30063959-30064150,30064280-30064435,
30064525-30064599,30064667-30065068,30065418-30065495,
30065840-30066173,30066275-30066339
Length = 616
Score = 28.7 bits (61), Expect = 3.8
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = +2
Query: 197 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEI--LDIKPED 370
E++ +++P D G S +++ +++ P+S VV+ +Y+S + A +I K +
Sbjct: 272 EMLPSGFLIRPSDG-GGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQKISMASCKIQS 330
Query: 371 LRAKFQAGVANVAALSLAIGYPTIASAPHSIA 466
LR Q VA S+ G+ +A H+++
Sbjct: 331 LRCLRQ--VAYKDTRSVITGWGRKLAALHALS 360
>06_01_0486 - 3455030-3455770
Length = 246
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 78 PVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKF 182
P P P C S PP TP + R P + PS P +
Sbjct: 66 PPPSPRCPSCHPPYTPPT-PRPPPTPPYVPSPPPY 99
>04_04_1641 +
34993807-34994589,34994924-34995022,34995521-34995648,
34996095-34996235,34996456-34996542,34996627-34996780,
34998569-34998628,34999019-34999447,34999524-34999819,
35000278-35000407,35000690-35001187
Length = 934
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/51 (39%), Positives = 24/51 (47%)
Frame = +3
Query: 78 PVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLKSSTMYTS*SP 230
P P PH S PP P S + LSSKL P P+ S+T T+ P
Sbjct: 51 PPPPPHRPSPSPPPNPLS-SKLWLSSKLSPPPPETLEQPEPSTTTTTTTPP 100
>04_03_0899 +
20662671-20662818,20663655-20663959,20664080-20664265,
20665200-20665274,20665596-20665652
Length = 256
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 2 SCSPAXXLVEVRDKLLENKVQAPARPGAIAPLSVVIPA 115
SC+ A L+ + L A +RP A+APL+ I A
Sbjct: 8 SCAAARRLLRISPAALSTLTAASSRPAAVAPLARPIAA 45
>01_06_1014 - 33810112-33811995
Length = 627
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +3
Query: 57 KSRLQLVPVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPK--FQRVLLKSSTMYT 218
K R++L P+ +P + S PP PAS K L + + + +R +L++STM T
Sbjct: 104 KDRMKL-PLHVPVIKPSVPPLLPASSPAKLLPANVSEEWRRLEIERKILENSTMST 158
>11_06_0266 - 21791757-21792982,21793154-21793178
Length = 416
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +3
Query: 27 LRSVTNCWRTKSRLQLVPVPLP 92
LRSV WR +RL P PLP
Sbjct: 41 LRSVCQAWRAAARLHRPPPPLP 62
>12_01_0639 + 5383967-5385951,5386973-5387066,5387410-5387841,
5387935-5388219,5388324-5388641,5388756-5388983,
5389264-5389364,5389447-5389552,5389782-5390132,
5390262-5390401,5390687-5390861,5390937-5390954
Length = 1410
Score = 27.5 bits (58), Expect = 8.7
Identities = 21/89 (23%), Positives = 39/89 (43%)
Frame = +2
Query: 95 LSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNML 274
L+ V P G P + F+ L KI +GT I+ L+ G+ V + +NM
Sbjct: 813 LANVAPKAVEGWVPRRADSFEKLD---KIGQGTYSIVYKARDLETGNIVALKKVRFVNM- 868
Query: 275 NISPFSYGLVVKQVYDSGTIFAPEILDIK 361
P S + +++ T+ P ++ ++
Sbjct: 869 --DPESVRFMAREIKILRTLDHPNVIKLQ 895
>06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137
Length = 542
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +2
Query: 224 KPGDKVGASEATLLNMLNISPFS--YGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGV 397
KP D V +S TLL N + FS Y L +++ + A D +++ K Q G+
Sbjct: 423 KPSDVVASSYVTLLQAANYATFSLDYALELEERLRARERDAAAEADAMRKEVEEKAQRGL 482
Query: 398 ANVAALSL 421
A A ++
Sbjct: 483 AAAKAAAV 490
>03_05_0907 + 28678909-28679253
Length = 114
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 129 RPVLWAGMTTDNGAMAPGRAGA 64
RP+L NGA APG AGA
Sbjct: 53 RPLLHGSAAAANGASAPGNAGA 74
>02_04_0571 -
23963088-23963174,23963265-23963512,23963913-23963999,
23964023-23964143,23964257-23964366,23964464-23964635,
23965615-23965648,23965830-23965849
Length = 292
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = +1
Query: 337 CT*NSGHQTRGSPCQVPSWXXXXXXXFFGYWIPNYCFS 450
C+ + GH +GS C++ +W W+ + FS
Sbjct: 241 CSHSGGHALQGSECELTTWSATKQQKSGKIWLKDIIFS 278
>01_06_1676 -
39084928-39085016,39085462-39085555,39085664-39085750,
39085941-39086073,39086451-39086724,39086863-39086989,
39087095-39087345,39087476-39087575
Length = 384
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +2
Query: 290 SYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAAL 415
SYG V V DSGT A + LD + ++F VA V+ L
Sbjct: 83 SYGRVYYAVLDSGTKIAVKKLDSNENEPTSEFLTQVALVSRL 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,343,738
Number of Sequences: 37544
Number of extensions: 393122
Number of successful extensions: 1172
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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