Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0050
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   235   2e-62
AC024849-3|AAK68547.1|  327|Caenorhabditis elegans Hypothetical ...    29   3.3  
AF000195-2|AAC24267.1|  316|Caenorhabditis elegans Hypothetical ...    28   4.4  
Z32683-4|CAA83629.1|  443|Caenorhabditis elegans Hypothetical pr...    27   7.7  
L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorte...    27   7.7  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  235 bits (574), Expect = 2e-62
 Identities = 109/180 (60%), Positives = 137/180 (76%)
 Frame = +2

Query: 23  LVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEI 202
           L E+R KLLEN+  APA+ GAIAP  V +P  NTG+GPEKTSFFQAL IPTKI++GTIEI
Sbjct: 95  LGEIRSKLLENRKGAPAKAGAIAPCDVKLPPQNTGMGPEKTSFFQALQIPTKIARGTIEI 154

Query: 203 INDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAK 382
           +NDVH++K GDKVGASE+ LLNML ++PFSYGLVV+QVYD GT++ PE+LD+  E+LR +
Sbjct: 155 LNDVHLIKEGDKVGASESALLNMLGVTPFSYGLVVRQVYDDGTLYTPEVLDMTTEELRKR 214

Query: 383 FQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXXKEFIKDPSK 562
           F +GV NVA++SLA+ YPT+AS  HS+ANG +N+L                K FI DPSK
Sbjct: 215 FLSGVRNVASVSLAVNYPTLASVAHSLANGLQNMLGVAAVTDVSFKEAETIKAFIADPSK 274


>AC024849-3|AAK68547.1|  327|Caenorhabditis elegans Hypothetical
           protein Y67D8B.2 protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = +2

Query: 2   SCSPAXXLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKI 181
           +CSP    ++    +L   +Q  A   A+  L+  +P   TGL P +   FQAL  P  I
Sbjct: 30  NCSP--YFLQDFTHVLNRYMQLEAYCDAVDDLTGALP--KTGLAPNEPDLFQALFFPRSI 85

Query: 182 SKGT 193
           +  T
Sbjct: 86  APRT 89


>AF000195-2|AAC24267.1|  316|Caenorhabditis elegans Hypothetical
           protein C32F10.4 protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 81  VPLPHCQSSFPPTTPASVQRKPLSSKLFPSLP-KFQRVLLKSSTMYTS 221
           VP P   S  PP    +    P+SS+  P +P K Q V  +SST   S
Sbjct: 207 VPTPMSPSGMPPPPRYTAYAPPMSSQTAPPIPTKQQPVDSESSTTSAS 254


>Z32683-4|CAA83629.1|  443|Caenorhabditis elegans Hypothetical
           protein R07E5.6 protein.
          Length = 443

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 66  LQLVPVPLPHCQSSFPPTTPASVQRKPL 149
           L  +  P P    S PPT P S  RKP+
Sbjct: 377 LSTLATPSPVPSPSVPPTAPPSTPRKPM 404


>L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 19 protein.
          Length = 683

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = +3

Query: 147 LSSKLFPSLPKFQRVLLKSSTMYTS*SPVTRLELLKPPFSTC*TSLHSHMVLLLSRYMIL 326
           L+S   P+L  +Q       T   S      L+L+  PFST  T +HSH++  L  +++L
Sbjct: 251 LTSMAVPALLFWQFTQFAFFTQICSIFLAFSLDLI--PFSTAKTVIHSHIISFLIGFLLL 308


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,979,848
Number of Sequences: 27780
Number of extensions: 310163
Number of successful extensions: 1026
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)