Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0050
         (600 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)      202   1e-52
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)...   199   1e-51
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)...   198   2e-51
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con...    36   0.027
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit...    30   1.3  
At5g04470.1 68418.m00445 expressed protein                             29   2.4  
At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-conta...    29   3.1  
At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger) fa...    28   5.4  
At4g37380.1 68417.m05293 pentatricopeptide (PPR) repeat-containi...    28   5.4  
At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family...    28   5.4  
At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family...    28   5.4  

>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 
          Length = 317

 Score =  202 bits (494), Expect = 1e-52
 Identities = 97/180 (53%), Positives = 127/180 (70%)
 Frame = +2

Query: 23  LVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEI 202
           L EV +++ + KV APAR G +AP+ VV+   NTGL P +TSFFQ L+IPTKI+KGT+EI
Sbjct: 98  LKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEI 157

Query: 203 INDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAK 382
           I  V ++K GDKVG+SEA LL  L I PFSYGLVV+ VYD+G++F PE+L++  +DL  K
Sbjct: 158 ITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESVYDNGSVFNPEVLNLTEDDLVEK 217

Query: 383 FQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXXKEFIKDPSK 562
           F AGV+ + ALSLAI YPT+A+APH   N +KN+L                KEF+KDP+K
Sbjct: 218 FAAGVSMITALSLAISYPTVAAAPHMFLNAYKNVLAVALATEYSFPQAENVKEFLKDPTK 277


>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
           similar to 60S acidic ribosomal protein P0 GI:2088654
           [Arabidopsis thaliana]
          Length = 323

 Score =  199 bits (486), Expect = 1e-51
 Identities = 94/180 (52%), Positives = 126/180 (70%)
 Frame = +2

Query: 23  LVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEI 202
           L EV +++ + KV APAR G +AP+ VV+   NTGL P +TSFFQ L+IPTKI+KGT+EI
Sbjct: 97  LKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEI 156

Query: 203 INDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAK 382
           I  V ++K GDKVG+SEA LL  L I PFSYGLVV+ VYD+G++F+PE+LD+  + L  K
Sbjct: 157 ITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEK 216

Query: 383 FQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXXKEFIKDPSK 562
           F +G++ V +L+LA+ YPT+A+APH   N +KN L                KEF+KDPSK
Sbjct: 217 FASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATDYTFPQAEKVKEFLKDPSK 276


>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
           similar to putative 60S acidic ribosomal protein P0
           GB:P50346 [Glycine max]
          Length = 320

 Score =  198 bits (483), Expect = 2e-51
 Identities = 93/180 (51%), Positives = 126/180 (70%)
 Frame = +2

Query: 23  LVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEI 202
           L EV +++ + KV APAR G +AP+ VV+   NTGL P +TSFFQ L+IPTKI+KGT+EI
Sbjct: 97  LKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEI 156

Query: 203 INDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAK 382
           I  V ++K GDKVG+SEA LL  L I PFSYGLVV+ VYD+G++F+PE+LD+  + L  K
Sbjct: 157 ITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEK 216

Query: 383 FQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXXKEFIKDPSK 562
           F +G++ V +L+LA+ YPT+A+APH   N +KN L                KE++KDPSK
Sbjct: 217 FASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATEYTFPQAEKVKEYLKDPSK 276


>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
           contains similarity to 60S acidic ribosomal protein
           GI:5815233 from [Homo sapiens]
          Length = 235

 Score = 35.5 bits (78), Expect = 0.027
 Identities = 17/81 (20%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
 Frame = +2

Query: 137 EKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNML--NISPFSYGLVVK 310
           E     + L +P +++KGT+E++ D  + + G ++    A +L +L   ++ F   L+ +
Sbjct: 149 EMEPLLRKLEMPVRLNKGTVELVADFVVCEEGKQLSPKSAHILRLLRMKMATFKLNLLCR 208

Query: 311 QVYDSGTIFAPEILDIKPEDL 373
                  ++  ++ ++  EDL
Sbjct: 209 WSPSDFELYREDLSELYREDL 229


>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
           family protein low similarity to extensin [Volvox
           carteri] GI:21992
          Length = 312

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 21/61 (34%), Positives = 24/61 (39%)
 Frame = +3

Query: 78  PVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLKSSTMYTS*SPVTRLELLKP 257
           P PL    SS PP  P+S     LS  L PS P         S++  S  P   L    P
Sbjct: 58  PPPLSLSPSSPPPPPPSSSPLSSLSPSLSPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSP 117

Query: 258 P 260
           P
Sbjct: 118 P 118


>At5g04470.1 68418.m00445 expressed protein
          Length = 127

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 84  PLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLK 200
           P P  Q   PP+TP+S+  +    KL  SL K++ ++ K
Sbjct: 51  PPPPPQKPRPPSTPSSLGIRSCKRKLMTSLSKYEIIVNK 89


>At5g12430.1 68418.m01461 DNAJ heat shock N-terminal
           domain-containing protein similarity to
           TETRATRICOPEPTIDE REPEAT PROTEIN 2 , human,
           SWISSPROT:TTC2_HUMAN; contains Pfam profiles PF00226:
           DnaJ domain, PF00515: TPR Domain
          Length = 1165

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = -1

Query: 384 NLARRSSGLMSRI-SGAKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTS 208
           N+ R  +   S I +G+   PE+Y+ +   PYE  E   + R  +++ P  +P +     
Sbjct: 357 NIGREFAFAESAIPNGSNEAPEAYSPMDISPYEETE---VCREFSADIPPTAPNYLFDAE 413

Query: 207 LMISIVPFEILVGME 163
           L+ +    EI  G E
Sbjct: 414 LVAATERMEINEGDE 428


>At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger)
           family protein predicted proteins, Arabidopsis thaliana
           ; contains Pfam profile PF00097: Zinc finger, C3HC4 type
           (RING finger)
          Length = 411

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 111 PPTTPASVQRKPLSSKLFPSLPKFQ-RVLLKSSTMYTS*SPVTRLELLKPPFSTC 272
           P  TP+    + LS K   SLP ++ R+LL  S   TS  P+    +  P +  C
Sbjct: 58  PKPTPSLGILRNLSLKRKASLPNYERRLLLSPSVSETSEKPLVASPITSPYWKRC 112


>At4g37380.1 68417.m05293 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 632

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 27/98 (27%), Positives = 42/98 (42%)
 Frame = +2

Query: 191 TIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPED 370
           TIEI N VH  + GD+  +    +  ML         + +++   G  + P    +  +D
Sbjct: 502 TIEIENKVHEFRAGDREHSKSKEIYTMLR-------KISERIKSHG--YVPNTNTVL-QD 551

Query: 371 LRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNL 484
           L    +     V +  LAI Y  I++ P S    FKNL
Sbjct: 552 LEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNL 589


>At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family
           protein contains Pfam profiles: PF00393
           6-phosphogluconate dehydrogenase C-terminal domain,
           PF03446 NAD binding domain of 6-phosphogluconate
           ;similar to 6-phosphogluconate dehydrogenase GB:BAA22812
           GI:2529229 [Glycine max]
          Length = 486

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 211 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGND 104
           IVD  N    N  R  K++ E GFL+   GV GG +
Sbjct: 102 IVDGGNEWYENTERREKAVAENGFLYLGMGVSGGEE 137


>At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family
           protein contains Pfam profiles: PF00393
           6-phosphogluconate dehydrogenase C-terminal domain,
           PF03446 NAD binding domain of 6-phosphogluconate
           ;similar to 6-phosphogluconate dehydrogenase GB:BAA22812
           GI:2529229 [Glycine max]
          Length = 486

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 211 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGND 104
           IVD  N    N  R  K++ E GFL+   GV GG +
Sbjct: 102 IVDGGNEWYENTERREKAVAENGFLYLGMGVSGGEE 137


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,501,052
Number of Sequences: 28952
Number of extensions: 301023
Number of successful extensions: 837
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)