Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0047
         (650 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    59   3e-11
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    55   4e-10
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    25   0.71 

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 59.3 bits (137), Expect = 3e-11
 Identities = 25/58 (43%), Positives = 37/58 (63%)
 Frame = +2

Query: 305 KTADVRPPFTYAYLIRXAIIESADKQVTLNEIYNWXQSTFCYFRRNAXTWKNAVRHNL 478
           K +  +PP++Y  LI  AI  S +K++TLN IY +    F Y+R N   W+N++RHNL
Sbjct: 78  KKSKEKPPYSYNALIMMAIRNSPEKRLTLNGIYEYIMRNFPYYRENKQGWQNSIRHNL 135


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 55.2 bits (127), Expect = 4e-10
 Identities = 22/53 (41%), Positives = 35/53 (66%)
 Frame = +2

Query: 320 RPPFTYAYLIRXAIIESADKQVTLNEIYNWXQSTFCYFRRNAXTWKNAVRHNL 478
           +PP++Y  LI  AI  S  K +TL+EIY +    F ++R+N   W+N++RH+L
Sbjct: 140 KPPYSYISLITMAIQNSPQKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSL 192


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 231 PLEDASPISQESPLPERSNGTVSS 302
           P + ASP+    P+P+R+  T SS
Sbjct: 189 PTQGASPLPLLVPIPQRTASTASS 212


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,137
Number of Sequences: 336
Number of extensions: 1512
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)