Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0047
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 66 5e-12
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 62 7e-11
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 57 2e-09
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 51 2e-07
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 29 0.58
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 26 5.4
SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase |Schizosaccha... 26 5.4
SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway prote... 25 7.2
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 25 7.2
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb... 25 7.2
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 65.7 bits (153), Expect = 5e-12
Identities = 27/71 (38%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Frame = +2
Query: 272 AGEIQRNREFYKTAD--VRPPFTYAYLIRXAIIESADKQVTLNEIYNWXQSTFCYFRRNA 445
+ + Q EF+ D +PP++YA LI +II S D+++TL+ IY+W +TF ++ ++
Sbjct: 110 SSQSQEPEEFFLPLDDGKKPPYSYAMLIGMSIIRSPDRRLTLSAIYDWISNTFSFYNKSN 169
Query: 446 XTWKNAVRHNL 478
W+N++RHNL
Sbjct: 170 NGWQNSIRHNL 180
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 62.1 bits (144), Expect = 7e-11
Identities = 27/67 (40%), Positives = 43/67 (64%)
Frame = +2
Query: 320 RPPFTYAYLIRXAIIESADKQVTLNEIYNWXQSTFCYFRRNAXTWKNAVRHNLXXXQMLY 499
+PP +YA LI AI++S +KQ+TL+ IY W ++TF Y+ + W+N++RHNL +
Sbjct: 81 KPPCSYATLIGLAILQSHNKQLTLSGIYTWIRNTFRYYLNHDGGWQNSIRHNLSLNKAFI 140
Query: 500 ARXERKG 520
+ KG
Sbjct: 141 KVEKPKG 147
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 57.2 bits (132), Expect = 2e-09
Identities = 20/53 (37%), Positives = 37/53 (69%)
Frame = +2
Query: 320 RPPFTYAYLIRXAIIESADKQVTLNEIYNWXQSTFCYFRRNAXTWKNAVRHNL 478
+PP++Y+ +I AI+ S++ +TL+ IY+W + + Y+R W+N++RHNL
Sbjct: 223 KPPYSYSVMIAQAILSSSECMMTLSNIYSWISTHYPYYRTTKSGWQNSIRHNL 275
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 50.8 bits (116), Expect = 2e-07
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = +2
Query: 311 ADVRPPFTYAYLIRXAIIESADKQVTLNEIYNWXQSTFCYFRRNAXTWKNAVRHNL 478
A +P +YA LI +I + +K++TL +I W + + Y+R W N++RHNL
Sbjct: 288 ATQKPNLSYANLIARTLIANPNKKMTLGDICEWIANNWSYYRHQPPAWHNSIRHNL 343
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 29.1 bits (62), Expect = 0.58
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +2
Query: 308 TADVRPPFTYAYLIRXAIIESADKQVT----LNEIYNWXQSTFCYFRRNAXTWKN 460
T DVRPP+ ++ +++S V LNE++ + Q Y++ N T N
Sbjct: 492 TEDVRPPYK-GIILMLNVLDSCTNYVGRYTFLNELFEYLQEKTTYYKNNLTTLLN 545
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -2
Query: 388 GHLLIGRFDYGLPYEVRVCEWRP--HVRRLVE 299
GH LI R G ++ + +W+P HV +LV+
Sbjct: 1167 GHNLIARVKIGELFDTFIKDWKPHFHVNQLVK 1198
>SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 25.8 bits (54), Expect = 5.4
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -2
Query: 427 AECRLXPVVDLVQGHLLIGRF-DYGLPYEVRVC-EWRPHVRRLVELTVPLDLSGNG 266
A +L + D G L F +Y PY VR+C E + H+++ VP+ + G
Sbjct: 198 AGAQLLQIFDSWAGELSPEDFTEYAYPYLVRICQEVKQHLKKKKRDEVPMIVFAKG 253
>SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway protein
But1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 243
Score = 25.4 bits (53), Expect = 7.2
Identities = 6/25 (24%), Positives = 16/25 (64%)
Frame = -2
Query: 337 VCEWRPHVRRLVELTVPLDLSGNGD 263
+C+W+ H+ R ++ ++P+ N +
Sbjct: 155 ICQWKAHLPRALQFSLPVISDSNNE 179
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 422 FCYFRRNAXTWKNAVRHNL 478
FC F N+ +W+N + HNL
Sbjct: 887 FCIFEYNSSSWRN-ISHNL 904
>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -1
Query: 323 AARPPSCRTHGSVGSLRQWRLL 258
A PP HG +GS R WR L
Sbjct: 18 AKHPPVLIFHGLLGSKRNWRSL 39
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,651,820
Number of Sequences: 5004
Number of extensions: 23406
Number of successful extensions: 61
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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