Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0047
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078     30   1.8  
04_01_0614 + 8049199-8049579                                           30   1.8  
01_06_0148 - 27007330-27008124                                         28   7.4  
07_03_0435 + 18182657-18183509,18184477-18184574,18184663-181848...    27   9.8  
07_01_0565 + 4188387-4190570                                           27   9.8  
03_01_0273 - 2107778-2108772,2108857-2109043,2109121-2110575,211...    27   9.8  

>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
          Length = 1034

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 200 GAPSEGTSPGPVRRRVSDKSGVAIAGEIQRNREFYKTADVRPP 328
           GAP+   +P P  RR+ D+     +G ++R     +   V+PP
Sbjct: 137 GAPAPAPAPAPAARRIQDEGAARSSGTVERIAS-TEVVRVQPP 178


>04_01_0614 + 8049199-8049579
          Length = 126

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 207 RARGHHRGPLEDASPISQESPLPERSNGTVS 299
           R+RG+H   L   +P+   SP P  SN T+S
Sbjct: 11  RSRGNHLSTLPSDTPVYGPSPSPSPSNATLS 41


>01_06_0148 - 27007330-27008124
          Length = 264

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 320 ARPPSCRTHGSVGSLRQWRLLTYR 249
           A P  CR  GS GS+ +WR ++ R
Sbjct: 148 ASPRRCRKSGSTGSVLRWRRISER 171


>07_03_0435 +
           18182657-18183509,18184477-18184574,18184663-18184833,
           18185524-18185624,18185702-18185837,18186007-18186057,
           18186202-18186489,18186610-18186844,18186924-18187204,
           18187336-18187557
          Length = 811

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = +3

Query: 204 PRARGHHRGPLE----DASPISQESPLPERSNGTVSSTRR 311
           PR R   RG LE    DA+P ++E P P  + G  +  RR
Sbjct: 138 PRRRIDLRGELELEIPDAAPAAEEDPAPAPARGGRADARR 177


>07_01_0565 + 4188387-4190570
          Length = 727

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +3

Query: 264 SPLPERSNGTVSSTRRRTCGLHSHTRTSYGRP 359
           SP PER+     + RRRT   H H R S  RP
Sbjct: 3   SPPPERAPAA-EARRRRTTVYHGHRRPSPHRP 33


>03_01_0273 -
           2107778-2108772,2108857-2109043,2109121-2110575,
           2110670-2111251
          Length = 1072

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 195 LQEPRARGHHRGPLEDASPISQESPLPERSNGT 293
           +  PRA GHH+G    AS    ++P P  S GT
Sbjct: 778 VSSPRAHGHHQGQGGMAS--GGQNPRPSTSRGT 808


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,713,474
Number of Sequences: 37544
Number of extensions: 203721
Number of successful extensions: 579
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)