Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0047
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.      145   3e-37
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.8  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   7.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score =  145 bits (352), Expect = 3e-37
 Identities = 68/85 (80%), Positives = 74/85 (87%), Gaps = 1/85 (1%)
 Frame = +2

Query: 227 GPVRRRVS-DKSGVAIAGEIQRNREFYKTADVRPPFTYAYLIRXAIIESADKQVTLNEIY 403
           G VRRRV+ D+SG+ I  EIQRNREFYK ADVRPPFTYA LIR +IIES DKQ+TLNEIY
Sbjct: 472 GTVRRRVAVDRSGIDINEEIQRNREFYKNADVRPPFTYASLIRQSIIESPDKQLTLNEIY 531

Query: 404 NWXQSTFCYFRRNAXTWKNAVRHNL 478
           NW Q+TFCYFRRNA TWKNAVRHNL
Sbjct: 532 NWFQNTFCYFRRNAATWKNAVRHNL 556



 Score = 39.5 bits (88), Expect = 3e-05
 Identities = 16/20 (80%), Positives = 17/20 (85%)
 Frame = +2

Query: 5   DDYQAFLKHLEAAHTLDDRS 64
           +DYQAFLKHL   HTLDDRS
Sbjct: 293 EDYQAFLKHLNTEHTLDDRS 312



 Score = 26.6 bits (56), Expect = 0.21
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = +3

Query: 483 LXKCFMRVXNXKGA 524
           L KCFMRV N KGA
Sbjct: 558 LHKCFMRVENVKGA 571


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 240  DASPISQESPLPERSNGTVSSTR 308
            D SP+S++  LP R   + SS R
Sbjct: 1828 DISPMSEQKSLPRRGRSSRSSLR 1850


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 240  DASPISQESPLPERSNGTVSSTR 308
            D SP+S++  LP R   + SS R
Sbjct: 1824 DISPMSEQKSLPRRGRSSRSSLR 1846


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +3

Query: 264 SPLPERSNGTVSSTRRRTCGLHSHTRT 344
           SP  ER  G         CGL  +TR+
Sbjct: 220 SPQEERPKGINGRRASLFCGLQKYTRS 246


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +3

Query: 264 SPLPERSNGTVSSTRRRTCGLHSHTRT 344
           SP  ER  G         CGL  +TR+
Sbjct: 215 SPQEERPKGINGRRASLFCGLQKYTRS 241


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,067
Number of Sequences: 438
Number of extensions: 1641
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)