Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0047
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65700.1 68418.m08269 leucine-rich repeat transmembrane prote...    28   4.7  
At3g49670.1 68416.m05429 leucine-rich repeat transmembrane prote...    28   4.7  

>At5g65700.1 68418.m08269 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 1003

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 451 SXRVAPEVAECRLXPVVDLVQGHL 380
           S R+APE++ C+L   VDL +  L
Sbjct: 516 SGRIAPEISRCKLLTFVDLSRNEL 539


>At3g49670.1 68416.m05429 leucine-rich repeat transmembrane protein
           kinase, putative CLAVATA1 receptor kinase, Arabidopsis
           thaliana, EMBL:ATU96879
          Length = 1002

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 451 SXRVAPEVAECRLXPVVDLVQGHL 380
           S R+APE++ C+L   VDL +  L
Sbjct: 517 SGRIAPEISRCKLLTFVDLSRNEL 540


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,249,491
Number of Sequences: 28952
Number of extensions: 140661
Number of successful extensions: 341
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)