Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0046
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ...    35   0.010
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    32   0.069
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.85 
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    29   0.85 
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.5  
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    26   6.0  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    25   7.9  
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     25   7.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   7.9  
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    25   7.9  
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        25   7.9  
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ...    25   7.9  

>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 35.1 bits (77), Expect = 0.010
 Identities = 16/30 (53%), Positives = 17/30 (56%)
 Frame = +3

Query: 186 PIQPINTYPQNNYAPPQNSYYPQNTYAPPQ 275
           P  P   Y   NY PPQ + YPQ  YAPPQ
Sbjct: 14  PAPPQQAYGGPNYYPPQQN-YPQQGYAPPQ 42



 Score = 32.7 bits (71), Expect = 0.052
 Identities = 17/40 (42%), Positives = 18/40 (45%)
 Frame = +3

Query: 156 PQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQ 275
           PQ  +  P     P   YPQ  YAPPQ   YPQ  Y   Q
Sbjct: 17  PQQAYGGP-NYYPPQQNYPQQGYAPPQG--YPQGGYPAQQ 53


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 32.3 bits (70), Expect = 0.069
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +3

Query: 168 WNAPPKPIQPINTYPQN-NYAPPQNSYYP-QNTYAPP 272
           + A P+P  P   YPQ   Y P Q +YYP Q  YA P
Sbjct: 96  YGAAPQPYPPQGGYPQQPYYYPNQPNYYPAQPAYAQP 132


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 138  PPIQWKPQNTWNAPPKPIQPINTYPQNN 221
            P  Q    +  +APP P+QP+N  P +N
Sbjct: 1365 PKPQIPDSSNVHAPPPPVQPMNAMPSHN 1392


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 336 VPVIKNEMYYGDNGSYKYEYQIXDGTHVXEEGYFTNP 446
           VP+  +   YG + SY YE  I + T+  +  Y  +P
Sbjct: 272 VPLPSSTNTYGPSNSYGYEININESTNHVDSSYLPHP 308


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +3

Query: 156 PQNTWNAPPKPIQPINTY--PQNNYAPPQNSYYPQNTYAPP 272
           P + +N    P Q    Y  PQ++YAPP  S  P+ +Y  P
Sbjct: 99  PSSNYNTAKPPYQTSQFYARPQSSYAPPP-SGRPRISYPYP 138


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 198 INTYPQNNYAPPQNSYYPQNTYA 266
           IN  P+  + PP +SY+P+  +A
Sbjct: 60  INNDPKVRFLPPVDSYHPKRNHA 82


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 360 YYGDNGSYKYEYQIXDGTHVXEEGYFTNPNTEEASLVKKGWYSYTGADGKV 512
           YY D+   + E  I  G  V   GY   P   +A+  + GW+  TG  G++
Sbjct: 482 YYTDSSPPRGEVWIR-GPAVCN-GYLNRPEDNKAAFTEDGWFK-TGDVGEI 529


>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 223 TPPLKTHTILRIPMHLLKTPXVPPGARLHIRLRLQQLP 336
           T   KT+T+L+ P H++        A + I  +LQQLP
Sbjct: 172 TDAYKTYTMLKYPAHIVAV------ASISIACKLQQLP 203


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 138 PPIQWKPQNTWNAPPKPIQPINTYPQNN 221
           PP      +  N+PP+PI P++  P  N
Sbjct: 258 PPSNGTVSSPPNSPPRPIAPVSMNPAIN 285


>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 156 PQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAP 269
           P++T + P K I  +    QN+Y P   S+Y Q+   P
Sbjct: 370 PESTASTPKKRILHV----QNDYVPHYRSFYQQHEQNP 403


>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +3

Query: 162 NTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNT---YAPPQ 275
           N +N    P  P NTY + NY+ P N     NT   Y PP+
Sbjct: 6   NPYNGGQYP--PYNTYTRPNYS-PNNGSQSNNTVHQYQPPR 43


>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 364

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 167 VERSTQADPADKHLSPKQLRPPSKLILSSEY 259
           +ER ++ +   K+LSP      SK+ +SS+Y
Sbjct: 43  IERRSKRESLSKNLSPNDNSHNSKIDISSDY 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,666,907
Number of Sequences: 5004
Number of extensions: 56447
Number of successful extensions: 197
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)