Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0046
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0164 - 1326002-1326409,1326410-1326428,1326523-1326647,132... 35 0.054
01_06_1682 - 39130696-39131705,39132355-39132583 31 0.88
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 31 0.88
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 31 1.2
03_05_0388 + 23726957-23727418,23730016-23730262,23731072-237312... 30 1.5
07_03_1067 + 23728642-23728690,23728832-23729010 30 2.0
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 29 2.7
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 29 2.7
07_03_0600 + 19866757-19867218,19867920-19868429 29 2.7
01_06_0046 + 25943183-25943590 29 3.5
11_01_0385 + 2915532-2916482 29 4.7
02_01_0077 - 546033-546223,546314-546566,546635-546865,547165-54... 29 4.7
08_01_0494 + 4305440-4305727 28 6.2
06_01_0285 - 2090427-2090558,2091045-2091119,2091334-2091407,209... 28 6.2
05_01_0142 - 940421-940701,941262-941574 28 6.2
02_05_0884 - 32483735-32483866,32484417-32484491,32484707-324847... 28 6.2
01_06_0747 - 31645136-31646521,31647870-31648142,31649080-316491... 28 6.2
04_03_0904 + 20717005-20718087 28 8.2
03_06_0758 - 36052261-36052301,36052463-36052697,36052895-360529... 28 8.2
>03_01_0164 -
1326002-1326409,1326410-1326428,1326523-1326647,
1327482-1327530,1328834-1328855,1328969-1329071
Length = 241
Score = 35.1 bits (77), Expect = 0.054
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = +3
Query: 138 PPIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQ 275
PP Q P + PP YP PP SY PQ +Y PPQ
Sbjct: 193 PPAQGYPPAAY--PPAGYPQGGAYPPPGSYPPPGSYPPQGSYPPPQ 236
>01_06_1682 - 39130696-39131705,39132355-39132583
Length = 412
Score = 31.1 bits (67), Expect = 0.88
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +3
Query: 138 PPIQWK-PQNTWNAPPKPIQPINTYPQNNYAPPQ---NSYYPQNTYAPP 272
PP+ + P + +PP P N+ P N+Y+PP S P Y+PP
Sbjct: 301 PPLAHQYPPPPYKSPPIPPYYFNSPPANHYSPPPYNFGSSPPTYQYSPP 349
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +3
Query: 141 PIQWKPQNTWNAPPKPIQPINTYPQNNY-APPQNSYYPQNTY-APP 272
P Q+ P +N P P + PQ++Y +PP Y P N+Y APP
Sbjct: 209 PNQFSPP-PFNKFPPPSHQYPSPPQSSYHSPPPYQYTPPNSYQAPP 253
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 31.1 bits (67), Expect = 0.88
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Frame = +3
Query: 138 PPIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQNSY------YPQNTYAPPQN 278
PP P + APP N Y ++ PP +SY YP + APP N
Sbjct: 308 PPSYGGPGGDYAAPPSSYGGNNAYNSDSAVPPPSSYGGGPGSYPPSYGAPPPN 360
>03_03_0008 - 13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +3
Query: 177 PPKPIQPIN-TYPQNNYAPPQNSYYPQNTYAPP 272
PP PI P+N P N+ P Y+ N + PP
Sbjct: 1213 PPPPIAPLNPPGPHGNFPAPPAPYHGNNYHQPP 1245
>03_05_0388 +
23726957-23727418,23730016-23730262,23731072-23731220,
23731313-23731597,23731665-23731889,23734251-23734445
Length = 520
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Frame = +3
Query: 141 PIQWKPQNTWNAPPKPIQP----INTYPQNNYAPPQNSYYP 251
P W P W PP + P +PQ PQ++YYP
Sbjct: 301 PQPWGPPQPWGPPPSHLPPGGPGYGGHPQFMPPRPQDNYYP 341
>07_03_1067 + 23728642-23728690,23728832-23729010
Length = 75
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +3
Query: 177 PPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQ 275
PP P YP Y PPQ Y P PPQ
Sbjct: 30 PPAGYPPAQGYPPAGY-PPQQGYPPPYAQPPPQ 61
>10_08_0608 + 19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +2
Query: 134 EPAYPVETSKYVERSTQADPADKHLSPKQLRPPSKLILSSEYLCTSSK 277
EP+ +E + + ++D A LSP++ R PS L LSS YL S+K
Sbjct: 1437 EPSPALEKKRIEKVKPKSDAA---LSPEESRKPSGLQLSSTYLQGSTK 1481
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +1
Query: 145 SSGNLKIRGTLHPSRSSR*TLIPKTITPPLKTHTILRIPMHLLKTPXVPP 294
S+GN + R T P + + P TPP++ HT L M+ + VPP
Sbjct: 1305 SNGNFQFRPTGVPFQQGTFSAFPSAQTPPVRPHTHL-TQMNPVGQQAVPP 1353
>07_03_0600 + 19866757-19867218,19867920-19868429
Length = 323
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/45 (37%), Positives = 17/45 (37%)
Frame = +3
Query: 138 PPIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPP 272
PP Q P PP P Q PQ P Q P YAPP
Sbjct: 62 PPPQQPPAMWGQPPPPPPQYAPPPPQQFQLPHQQYAPPPQHYAPP 106
>01_06_0046 + 25943183-25943590
Length = 135
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 174 APPKPIQPINTYPQNNYAPPQNSYYPQNTYAPP 272
+PP P P P Y+PP +YYP +Y PP
Sbjct: 49 SPPPPALPPPP-PYYYYSPPPPAYYP-GSYCPP 79
>11_01_0385 + 2915532-2916482
Length = 316
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 147 QWKPQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPP 272
QW P +N PP P P +P N + PP ++P T A P
Sbjct: 178 QWPPLPPFNQPPTPEWP---HPGNKW-PPLPPFHPPPTPAWP 215
>02_01_0077 -
546033-546223,546314-546566,546635-546865,547165-547331,
547369-548008
Length = 493
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +3
Query: 138 PPIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQ 275
PP Q +P APP P Q P + PP+ P T PPQ
Sbjct: 67 PPSQ-EPDTPEPAPPTPPQQ-QQQPWQSPLPPRREPAPPRTVVPPQ 110
>08_01_0494 + 4305440-4305727
Length = 95
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 482 VLLHWS*WQSLHRATTGPTRLATMLTG 562
+LL W W + RA++GP+ +T+L G
Sbjct: 51 LLLGWRWWATPRRASSGPSPTSTLLDG 77
>06_01_0285 -
2090427-2090558,2091045-2091119,2091334-2091407,
2091792-2091903,2092036-2092108,2092291-2092346,
2092679-2092755,2093384-2093525
Length = 246
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 435 FTNPNTEEASLVKKGWYSYTGADGKVYTVPLLG 533
+ N N +A ++ GW Y G G++++VPL G
Sbjct: 113 YQNKNMLQAGMIVGGWDKYEG--GQIFSVPLGG 143
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = +3
Query: 138 PPIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQN 278
PP Q P + PP P P Y PP +Y P PPQ+
Sbjct: 30 PPHQGYPPQGYPPPPGAYPP----PPGAYPPPPGAYPPPPGAYPPQH 72
>02_05_0884 -
32483735-32483866,32484417-32484491,32484707-32484780,
32485180-32485291,32485476-32485548,32485674-32485729,
32486046-32486122,32486799-32486940
Length = 246
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 435 FTNPNTEEASLVKKGWYSYTGADGKVYTVPLLG 533
+ N N +A ++ GW Y G G++++VPL G
Sbjct: 113 YQNKNMLQAGMIVGGWDKYEG--GQIFSVPLGG 143
>01_06_0747 -
31645136-31646521,31647870-31648142,31649080-31649148,
31649486-31649614
Length = 618
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Frame = +3
Query: 138 PPIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQN-----SYYPQNTYAPP 272
PP+Q + NT PP+ +QP P N PQ Y P + PP
Sbjct: 397 PPVQPQQSNT-QLPPQAMQPQQHPPVQNQMRPQTPPNYPHYQPHQSLNPP 445
>04_03_0904 + 20717005-20718087
Length = 360
Score = 27.9 bits (59), Expect = 8.2
Identities = 21/47 (44%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +3
Query: 138 PPIQWKPQNTWNAPP--KPIQPINTY-PQNNYAPPQNSYYPQNTYAP 269
PP +KPQ N PP KP P TY PQ PP +Y PQ P
Sbjct: 226 PPPTYKPQPKPNPPPTYKPAPP--TYKPQPKPNPPP-TYKPQPKPTP 269
>03_06_0758 -
36052261-36052301,36052463-36052697,36052895-36052966,
36056477-36056567,36056650-36056872,36056964-36057300,
36057406-36057588
Length = 393
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +3
Query: 177 PPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQ 275
PP+ ++P+ +P APP YY P+
Sbjct: 193 PPEALRPLPPFPPTMLAPPAYPYYHPQPQPDPE 225
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,239,833
Number of Sequences: 37544
Number of extensions: 410474
Number of successful extensions: 1425
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1409
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -