Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0046
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.024
SB_27756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90
SB_52045| Best HMM Match : DUF1605 (HMM E-Value=3.8e-14) 29 2.7
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_21284| Best HMM Match : F5_F8_type_C (HMM E-Value=1.8e-21) 29 3.6
SB_3702| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_52821| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_8305| Best HMM Match : Plasmodium_HRP (HMM E-Value=8.8) 29 4.8
SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18) 28 6.3
SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18) 28 6.3
SB_46326| Best HMM Match : Scramblase (HMM E-Value=0) 28 6.3
SB_31091| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_11832| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_14537| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31) 28 8.4
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 36.3 bits (80), Expect = 0.024
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = +3
Query: 141 PIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQN 278
P P + PP P P YP PP N+ YP Y PP N
Sbjct: 139 PYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPPPYPPPPN 184
Score = 34.7 bits (76), Expect = 0.073
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +3
Query: 177 PPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQN 278
PP P P P Y PP N YP Y PP N
Sbjct: 133 PPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPN 166
Score = 34.3 bits (75), Expect = 0.096
Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Frame = +3
Query: 138 PPIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQNSYY---PQNTYAPPQN 278
PP P + PP P P YP Y PP N Y P Y PP N
Sbjct: 151 PPNPPYPPPLYPPPPNPPPPNAPYPPPPYPPPPNPPYPPPPNPPYPPPPN 200
Score = 33.1 bits (72), Expect = 0.22
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = +3
Query: 138 PPIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQN---TYAPPQN 278
PP + P PP P P P Y PP N+ YP + Y PP N
Sbjct: 104 PPPPYPPPPNPPYPPPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPN 153
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Frame = +3
Query: 138 PPIQWKPQNTWNAPP-KPIQPINTYP---QNNYAPPQNSYY---PQNTYAPPQN 278
PP + P + PP P P YP Y PP N+ Y P Y PP N
Sbjct: 84 PPTNFSPNPPYPPPPYPPYPPPPPYPPPPNPPYPPPPNAPYPPPPNPPYPPPPN 137
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +3
Query: 177 PPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQN 278
PP P P P Y PP N+ P Y PP N
Sbjct: 196 PPPPNAPNPPPPNPPYPPPPNA--PNPPYPPPPN 227
>SB_27756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 520
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 156 PQNTWNAPPKPIQPINTYPQNNYAPPQNSYY-PQNTYAPP 272
P ++ P K QP P +Y PP SY P +Y PP
Sbjct: 429 PHKSYQPPHKSYQP----PHKSYQPPHKSYQPPHKSYQPP 464
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 156 PQNTWNAPPKPIQPINTYPQNNYAPPQNSYY-PQNTYAPP 272
P ++ P K QP P +Y PP SY P +Y PP
Sbjct: 436 PHKSYQPPHKSYQP----PHKSYQPPHKSYQPPHKSYQPP 471
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 156 PQNTWNAPPKPIQPINTYPQNNYAPPQNSYY-PQNTYAPP 272
P ++ P K QP P +Y PP SY P +Y PP
Sbjct: 443 PHKSYQPPHKSYQP----PHKSYQPPHKSYQPPHKSYQPP 478
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +3
Query: 150 WKPQNTWNAPPKPIQP-INTY--PQNNYAPPQNSYY-PQNTYAPP 272
+ P++ + P K QP +Y P +Y PP SY P +Y PP
Sbjct: 406 YDPESQFRPPFKSYQPPYKSYQPPHKSYQPPHKSYQPPHKSYQPP 450
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 156 PQNTWNAPPKPIQPINTYPQNNYAPPQNSYY-PQNTYAPP 272
P ++ P K QP P +Y PP SY P +Y PP
Sbjct: 422 PYKSYQPPHKSYQP----PHKSYQPPHKSYQPPHKSYQPP 457
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 156 PQNTWNAPPKPIQPINTYPQNNYAPPQNSYY-PQNTYAPP 272
P ++ P K QP P +Y PP SY P +Y PP
Sbjct: 457 PHKSYQPPHKSYQP----PHKSYQPPYKSYQPPYKSYQPP 492
>SB_52045| Best HMM Match : DUF1605 (HMM E-Value=3.8e-14)
Length = 812
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 552 CLXGPFTPLLLPVPAAIQAGLDQN 623
CL P TP+LLP P+ + A L N
Sbjct: 789 CLTPPITPILLPTPSRVSAFLTFN 812
>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +3
Query: 138 PPIQWKPQNTWNAPP--KPIQPINTYPQNNYAPPQNSYYPQNT 260
PP Q P APP +P+QP + Y PPQ YP ++
Sbjct: 451 PPSQSTPSQ--QAPPTKQPMQPQHQYQARPGGPPQQRQYPPSS 491
>SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 795
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 174 APPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQ 275
+PP P P ++ APP+ S P + APPQ
Sbjct: 738 SPPSSKHPPTVSPSSSSAPPRPSTPPSVSSAPPQ 771
>SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 408 HRRFDTRICNCHYHHNTFHS 349
HR F CNCHY +N +S
Sbjct: 753 HRHFSLSRCNCHYENNNNNS 772
>SB_21284| Best HMM Match : F5_F8_type_C (HMM E-Value=1.8e-21)
Length = 564
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 482 PALFHQACLFCIGIREVAFLAYVCSIXDLILVFVTAIITIIHFIL 348
PA L C+ I + + + I +I++F+T I+ II I+
Sbjct: 316 PATSDAQLLLCLHIYIITIIITIIIIITIIIIFITTILIIITIII 360
>SB_3702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 168 WNAPPKPIQPINTYPQNNYAPP 233
++ PP+ + TYP NNY PP
Sbjct: 14 YSQPPQGYPGVQTYPINNYPPP 35
>SB_52821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 298
Score = 29.1 bits (62), Expect = 3.6
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = +3
Query: 375 GSYKYEYQIXDGTHVXEEGYFTNPNTEEASLVKKGWYS-YTG-ADGKVYTVPLLGRQDWL 548
G+ K+ ++ V G FT+ EA + Y+ G D V+ VP+LGR +L
Sbjct: 52 GTSKFWNRVMSILFVEFWGGFTDAGGREAHIQMHHPYTNIIGLGDSSVWKVPILGRVSYL 111
Query: 549 PCLXGP-FTPLLLPVPA 596
GP F PL+ P+ A
Sbjct: 112 --FIGPIFLPLIYPLVA 126
>SB_8305| Best HMM Match : Plasmodium_HRP (HMM E-Value=8.8)
Length = 366
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +3
Query: 153 KPQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAP 269
+P N N P IQP +TY Q + QN P +TY P
Sbjct: 17 QPNNPCN-PTTYIQPKDTYNQTTHTTQQNK-QPNDTYNP 53
>SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)
Length = 1284
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -3
Query: 524 WHGVNFAISSSVRVPALFHQACLFCIGI-REVAFLAYVCS 408
W G FA+ + P L H C FC ++ F VCS
Sbjct: 802 WKG-GFAVCFTTGAPELLHDLCYFCGSAGKDKMFFCKVCS 840
>SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18)
Length = 458
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -3
Query: 524 WHGVNFAISSSVRVPALFHQACLFCIGI-REVAFLAYVCS 408
W G FA+ + P L H C FC ++ F VCS
Sbjct: 143 WKG-GFAVCFTTGAPELLHDLCYFCGSAGKDKMFFCKVCS 181
>SB_46326| Best HMM Match : Scramblase (HMM E-Value=0)
Length = 554
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Frame = +3
Query: 156 PQNTWNAPPKPIQP--INTYPQNNYAPPQNSYYP--QNTYAPPQ 275
PQ + PP +Q PQ Y PPQ Y P Q Y P Q
Sbjct: 237 PQGYGHPPPVDVQSGYAGQPPQQGYPPPQGGYPPPQQPGYNPQQ 280
>SB_31091| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 607
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +3
Query: 174 APPKPIQPINTYPQNNYAPPQNSYY 248
APP P PI T PP N YY
Sbjct: 41 APPMPTVPIQTPSAPYQPPPSNDYY 65
>SB_11832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 493
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Frame = +3
Query: 144 IQWKPQNTWNAPPKPIQPINTYPQ---NNYA--PPQNSYYPQNTYAPP 272
+Q +P PP P N YP NYA PP Y PQ APP
Sbjct: 356 LQGQPPPGTYYPPPPQGNYNQYPVPGGQNYAGAPPPPYYPPQEYQAPP 403
>SB_14537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +3
Query: 138 PPIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAP 269
P +++P NT P QP Y N P Y+P Y P
Sbjct: 31 PSTRYQP-NTRYQPNTRYQPNTQYQPNTRYQPNTRYHPNTRYQP 73
>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
Length = 892
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/46 (32%), Positives = 17/46 (36%)
Frame = +3
Query: 138 PPIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQ 275
PP Q P P P + AP Q Y+PQ PPQ
Sbjct: 798 PPTQGGPPQAQPPPHAPPGQAHYQQLGAAAPNQGGYHPQQPPPPPQ 843
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,426,699
Number of Sequences: 59808
Number of extensions: 453603
Number of successful extensions: 1516
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1493
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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