Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0043
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    79   9e-16
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    29   0.54 
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    28   1.2  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    27   2.9  
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ...    27   2.9  
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    27   3.8  
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc...    27   3.8  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   3.8  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    27   3.8  
SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|c...    26   5.0  
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   6.6  
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo...    26   6.6  
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo...    26   6.6  
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S...    26   6.6  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    26   6.6  
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp...    26   6.6  
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos...    26   6.6  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    26   6.6  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    25   8.7  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    25   8.7  
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |...    25   8.7  

>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 78.6 bits (185), Expect = 9e-16
 Identities = 53/183 (28%), Positives = 80/183 (43%), Gaps = 2/183 (1%)
 Frame = +1

Query: 151 MTSSNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIRAK 330
           M++ + L KAI LV  A + D  + Y +A + Y+  ++YF+ A+KYE + E++KE IR+K
Sbjct: 1   MSNPDCLSKAISLVKTAIDNDNAEQYPDAYKYYQSALDYFMMALKYE-KNEKSKEIIRSK 59

Query: 331 CLQYLDRA--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQGKLEGAI 504
            ++YLDRA                                           L+  L  AI
Sbjct: 60  VIEYLDRAEKLKVYLQEKNNQISSKSRVSNGNVEGSNSPTANEALDSDAKKLRSALTSAI 119

Query: 505 VVEKPHVKWSDVXGXXXXXXXXXXXVILPIKFSTFVYWQENTMEGHLIILDPLVLVSPYL 684
           +VEKP+V+W D+ G           V+LPIK             G +++  P      YL
Sbjct: 120 LVEKPNVRWDDIAGLENAKEALKETVLLPIKLPQLFSHGRKPWSG-ILLYGPPGTGKSYL 178

Query: 685 AKA 693
           AKA
Sbjct: 179 AKA 181


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +3

Query: 648 YFGPPGTGKSILGK 689
           +FGPPGTGK++L K
Sbjct: 536 FFGPPGTGKTLLAK 549



 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 505 VVEKPHVKWSDVXGXXXXXXXXXXXVILPIKFS 603
           VVE P+V+W D+ G           V +P+ ++
Sbjct: 488 VVEVPNVRWEDIGGLEEVKRELRETVQMPVMYA 520



 Score = 25.4 bits (53), Expect = 8.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 636 RASYYFGPPGTGKSILGK 689
           R    +GPPGTGK+++ +
Sbjct: 259 RGILMYGPPGTGKTLMAR 276


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 636 RASYYFGPPGTGKSILGKGWGLLKQTIQHSSLVSS 740
           R    FGPPGTGK++L +      +++  S   SS
Sbjct: 493 RGMLLFGPPGTGKTMLARAVATESRSVFFSISASS 527


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +3

Query: 651 FGPPGTGKSILGK 689
           +GPPGTGK++L K
Sbjct: 694 YGPPGTGKTLLAK 706


>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
           Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +3

Query: 651 FGPPGTGKSILGK 689
           FGPPGTGK++L +
Sbjct: 225 FGPPGTGKTLLAR 237


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 636 RASYYFGPPGTGKSILGK 689
           R +   GPPGTGK++L K
Sbjct: 330 RGAILSGPPGTGKTLLAK 347


>SPAC1834.11c |sec18||secretory pathway protein Sec18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 792

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 630 HGRASYYFGPPGTGKSILGKGWG 698
           H +    +GPPGTGK+++ +  G
Sbjct: 303 HVKGILLYGPPGTGKTLIARQIG 325


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +2

Query: 635  KGILLFWTP--WYW*VHTWQRLGATEAN 712
            +G+   W+   WYW  H  +RL A EAN
Sbjct: 2117 QGVQQVWSAALWYWGAHLNKRLTAGEAN 2144


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +3

Query: 651 FGPPGTGKSILGK 689
           FGPPGTGK++L +
Sbjct: 418 FGPPGTGKTMLAR 430


>SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 576 GCNFTNKIFHICLLAREYHGRASYYFG 656
           GC   +K F +  L    +GRAS +FG
Sbjct: 36  GCELGDKSFIVTALLAYQYGRASVFFG 62


>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 654 GPPGTGKSILGKGWGLLKQTIQHSSLVSSSD 746
           GPPG+GKS    G   L   I  SS++ + D
Sbjct: 9   GPPGSGKSTYCFGMYQLLSAIGRSSIIVNLD 39


>SPCC576.10c |rpt3||19S proteasome regulatory subunit
           Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 389

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 636 RASYYFGPPGTGKSILGK 689
           R    +GPPGTGK++L K
Sbjct: 169 RGVLLYGPPGTGKTMLVK 186


>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
           Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 651 FGPPGTGKSILGK 689
           +GPPGTGK++L +
Sbjct: 172 YGPPGTGKTLLAR 184


>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
           Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 651 FGPPGTGKSILGK 689
           +GPPGTGK++L +
Sbjct: 185 YGPPGTGKTLLAR 197


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -3

Query: 421 FWIPRPLLVFSFDLF*DIPLIFQLYQDIEG-ILHEYFLLPFHL 296
           +W    +  F F L   IP++F L+  I G  LH +  +  HL
Sbjct: 310 YWTLNNIPNFLFALLSIIPILFALFYSISGSTLHSFRSIKSHL 352


>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +1

Query: 205 EEDKNKNYEEALR--LYEHGVEYFLHAVKYEAQGERAKESIRAKCLQYLD 348
           E+  N   E+ L+  +Y      F   VK+ A  + +  S++  C QYLD
Sbjct: 102 EQYNNPVAEKLLKDAIYNCNTPLFEKNVKWLATFDHSSPSVQQSCFQYLD 151


>SPAC1783.04c |hst4||Sir2 family histone deacetylase
           Hst4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +1

Query: 151 MTSSNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQ 297
           +TSS  + KAI L TK+ +  K  N    L    + +E     +K E +
Sbjct: 360 ITSSTKITKAIGLNTKSNDSSKKDNTSFQLHQVLNSIEIPKVEIKQEVE 408


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 196 KATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESI 321
           K  +E K+K+ ++  +LYE    +   + +YE   E  KE +
Sbjct: 164 KKLQEKKDKSLKDEKKLYEAETAFEQSSQEYEYYNEMLKEEL 205


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 636 RASYYFGPPGTGKSILGK 689
           R   + GPPGTGK+++ +
Sbjct: 301 RGVLFHGPPGTGKTLMAR 318


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 636 RASYYFGPPGTGKSILGK 689
           R   + GPPGTGK+++ +
Sbjct: 407 RGVLFHGPPGTGKTLMAR 424


>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 583 ILPIKFSTFVYWQENTMEGHLIILDPL 663
           +LPI+    V W E+ MEG +  + P+
Sbjct: 524 VLPIRIEKRVVWMEDGMEGGMEGMQPV 550


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,615,500
Number of Sequences: 5004
Number of extensions: 47110
Number of successful extensions: 171
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)