Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0043
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0268 - 2214923-2215048,2215131-2215286,2215371-2215469,221... 73 3e-13
02_01_0450 + 3234378-3234834,3235118-3235223,3235722-3235920,323... 66 2e-11
01_01_0270 - 2225250-2225263,2225549-2225732,2225817-2225972,222... 52 6e-07
01_06_0763 + 31800556-31800618,31800659-31800802,31800859-318009... 32 0.42
04_01_0600 + 7907142-7908047,7908218-7908316 31 0.98
05_03_0414 + 13650483-13651388,13651559-13651657 31 1.3
01_06_0280 + 28129750-28129868,28130677-28131145,28133605-281338... 30 2.3
01_06_0221 - 27653591-27653724,27654270-27654473,27655216-276553... 30 2.3
12_01_0519 - 4102251-4102352,4102522-4103439,4104763-4104837 29 3.9
04_04_0378 - 24822436-24822521,24822623-24822738,24823010-248230... 29 5.2
06_01_0860 - 6514921-6515034,6515125-6515196,6515344-6515400,651... 28 6.9
05_07_0274 - 28873531-28873644,28873727-28873981,28874111-288741... 28 6.9
05_06_0101 - 25581800-25581943,25582030-25582095,25582268-255823... 28 6.9
02_05_0752 + 31491462-31491921,31492177-31492271,31492346-314925... 28 6.9
01_01_0886 - 6970112-6970225,6970357-6970473,6970567-6970635,697... 28 6.9
11_06_0634 - 25685216-25685329,25685407-25685511,25685681-256857... 28 9.1
07_03_1647 + 28370226-28370369,28370452-28370611,28370704-283708... 28 9.1
03_02_0971 - 12807981-12808094,12808949-12809053,12809236-128092... 28 9.1
01_05_0749 + 24890944-24891146,24891414-24891535,24891633-248917... 28 9.1
>01_01_0268 -
2214923-2215048,2215131-2215286,2215371-2215469,
2215557-2215631,2215732-2215800,2216515-2216713,
2220162-2220267,2221117-2221588
Length = 433
Score = 72.5 bits (170), Expect = 3e-13
Identities = 56/182 (30%), Positives = 76/182 (41%), Gaps = 4/182 (2%)
Frame = +1
Query: 160 SNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIRAKCLQ 339
SN ++AI+ V +A +ED NY +A LY + +EYF +KYE + + KE+I AK +
Sbjct: 3 SNFKEQAIEYVKQAVQEDNAGNYVKAFPLYMNALEYFKTHLKYE-KNPKIKEAITAKFTE 61
Query: 340 YLDRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQGK----LEGAIV 507
YL RA Q K L AI+
Sbjct: 62 YLRRAEEIRAVLDEGGGGGGANGGDAAVATRPKTKGKDGEGGGDDSEQSKLRAGLNSAII 121
Query: 508 VEKPHVKWSDVXGXXXXXXXXXXXVILPIKFSTFVYWQENTMEGHLIILDPLVLVSPYLA 687
EKP++KW+DV G VILP+KF F + L+ P S YLA
Sbjct: 122 TEKPNIKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKS-YLA 180
Query: 688 KA 693
KA
Sbjct: 181 KA 182
>02_01_0450 +
3234378-3234834,3235118-3235223,3235722-3235920,
3236119-3236187,3236299-3236373,3236484-3236582,
3236694-3236864,3237394-3237519
Length = 433
Score = 66.5 bits (155), Expect = 2e-11
Identities = 52/174 (29%), Positives = 72/174 (41%)
Frame = +1
Query: 172 QKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIRAKCLQYLDR 351
++ I LV KA EED N+ AL LY H ++Y +KYE + R +++I AK Y+ R
Sbjct: 7 EQGILLVRKAVEEDDAGNHARALPLYVHALDYLAAHLKYE-RNPRVRDAITAKLAGYIAR 65
Query: 352 AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQGKLEGAIVVEKPHVKW 531
A L+ L AIV EKP+V+W
Sbjct: 66 A-EEIRDALLPAAGDDATPPAAAAEEGKAKCGGGEDESDRAKLRAGLHSAIVSEKPNVRW 124
Query: 532 SDVXGXXXXXXXXXXXVILPIKFSTFVYWQENTMEGHLIILDPLVLVSPYLAKA 693
SDV G V+LP++F F + + L+ P S YLAKA
Sbjct: 125 SDVSGLDGAKQALQEAVVLPVEFPQFFTGKRKPWKAFLLYGPPGTGKS-YLAKA 177
>01_01_0270 -
2225250-2225263,2225549-2225732,2225817-2225972,
2226276-2226374,2226489-2226563,2226682-2226750,
2226917-2227115,2227492-2227597,2228118-2228526
Length = 436
Score = 51.6 bits (118), Expect = 6e-07
Identities = 27/65 (41%), Positives = 41/65 (63%)
Frame = +1
Query: 160 SNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIRAKCLQ 339
SN ++AI+ V +A +ED NY +A LY + +EYF +KYE + + K++I AK +
Sbjct: 3 SNFKEQAIEYVKQAVQEDNGGNYVKAFPLYMNALEYFKTHLKYE-KDPKIKDAIAAKFTE 61
Query: 340 YLDRA 354
YL RA
Sbjct: 62 YLRRA 66
Score = 43.6 bits (98), Expect = 2e-04
Identities = 28/71 (39%), Positives = 34/71 (47%)
Frame = +1
Query: 481 QGKLEGAIVVEKPHVKWSDVXGXXXXXXXXXXXVILPIKFSTFVYWQENTMEGHLIILDP 660
+G L AIV KP VKWSDV G ILPIKF F + + + L+ P
Sbjct: 92 RGMLRSAIVAAKPSVKWSDVAGLESAKEALQEAAILPIKFPHFFTGKRSPWKAFLLYGPP 151
Query: 661 LVLVSPYLAKA 693
S YLA+A
Sbjct: 152 GTGKS-YLAEA 161
>01_06_0763 +
31800556-31800618,31800659-31800802,31800859-31800980,
31801742-31801807,31801891-31801998,31802226-31802292,
31802716-31802800,31803169-31803329,31803490-31803591,
31803807-31804029,31804155-31804300
Length = 428
Score = 32.3 bits (70), Expect = 0.42
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +2
Query: 599 FPHLFTGKRIPWKGILLFWTP 661
+P FTG PWKGILLF P
Sbjct: 166 YPKYFTGLLSPWKGILLFGPP 186
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +3
Query: 651 FGPPGTGKSILGK 689
FGPPGTGK++L K
Sbjct: 183 FGPPGTGKTMLAK 195
>04_01_0600 + 7907142-7908047,7908218-7908316
Length = 334
Score = 31.1 bits (67), Expect = 0.98
Identities = 26/87 (29%), Positives = 39/87 (44%)
Frame = +1
Query: 94 VKDTVEQFFAP*LW*I*KTMTSSNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFL 273
+ D V++ W + + + L K +DL TK +K +N E RL +H +
Sbjct: 134 IDDFVQEMEMTRFWPLERREVIAEVLLKNVDLKTKYHCPEKYENEE---RLADHKAQCSF 190
Query: 274 HAVKYEAQGERAKESIRAKCLQYLDRA 354
V G RAK S+R C+Q D A
Sbjct: 191 RPVTCPNDGCRAKVSVR--CMQDHDSA 215
>05_03_0414 + 13650483-13651388,13651559-13651657
Length = 334
Score = 30.7 bits (66), Expect = 1.3
Identities = 26/87 (29%), Positives = 39/87 (44%)
Frame = +1
Query: 94 VKDTVEQFFAP*LW*I*KTMTSSNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFL 273
+ D V++ W + + + L K +DL TK +K +N E RL +H +
Sbjct: 134 IDDFVQEMEMTRFWPLERREIIAEVLLKNVDLKTKYHCPEKYENEE---RLADHKAQCSF 190
Query: 274 HAVKYEAQGERAKESIRAKCLQYLDRA 354
V G RAK S+R C+Q D A
Sbjct: 191 RPVTCPNDGCRAKVSVR--CMQDHDSA 215
>01_06_0280 +
28129750-28129868,28130677-28131145,28133605-28133802,
28134168-28134412,28134749-28134907,28135491-28135578,
28135983-28136264
Length = 519
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 602 PHLFTGKRIPWKGILLFWTP 661
P F G R PWKG+L+F P
Sbjct: 258 PEYFQGIRRPWKGVLMFGPP 277
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +3
Query: 651 FGPPGTGKSILGK 689
FGPPGTGK++L K
Sbjct: 274 FGPPGTGKTLLAK 286
>01_06_0221 -
27653591-27653724,27654270-27654473,27655216-27655315,
27655728-27655888,27656846-27656930,27657548-27657614,
27658434-27658541,27658639-27658704,27659341-27659387,
27659497-27659691,27659833-27659877
Length = 403
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 599 FPHLFTGKRIPWKGILLFWTP 661
+P F G PWKGILLF P
Sbjct: 152 YPKYFKGLLSPWKGILLFGPP 172
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +3
Query: 651 FGPPGTGKSILGK 689
FGPPGTGK++L K
Sbjct: 169 FGPPGTGKTMLAK 181
>12_01_0519 - 4102251-4102352,4102522-4103439,4104763-4104837
Length = 364
Score = 29.1 bits (62), Expect = 3.9
Identities = 22/77 (28%), Positives = 33/77 (42%)
Frame = +1
Query: 94 VKDTVEQFFAP*LW*I*KTMTSSNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFL 273
+ D V++ W + + + L K +DL TK +K YE RL +H +
Sbjct: 163 IDDFVQEMEMTRFWPLERREAIAEVLLKNVDLKTKYHCPEK---YENEQRLADHKAQCSF 219
Query: 274 HAVKYEAQGERAKESIR 324
V G RAK S+R
Sbjct: 220 RPVTCPNDGCRAKVSVR 236
>04_04_0378 -
24822436-24822521,24822623-24822738,24823010-24823092,
24823772-24823918,24824004-24824051,24824153-24824353,
24824981-24825152,24825235-24825299,24825813-24825939,
24826436-24826528,24826608-24826696,24826804-24826950,
24827047-24827359,24827474-24828048
Length = 753
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 163 NTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESI 321
N + K I+L E++ K EEA R Y+ E HA + A GE+ ++
Sbjct: 605 NLVNKEIELYNTMLEKEGTKGEEEARRAYKAAREESDHAAEI-AAGEKVSSAL 656
>06_01_0860 -
6514921-6515034,6515125-6515196,6515344-6515400,
6515512-6515650,6515737-6515921,6516043-6516126,
6516552-6516674,6518043-6518219,6518331-6518400,
6518478-6518574,6519022-6519097,6519240-6519329,
6519548-6519655,6520715-6520756,6520854-6521045,
6521239-6521309,6521396-6521550,6521999-6522064,
6522769-6522820,6523476-6523566,6523897-6524094,
6524173-6524267,6524361-6524485,6524586-6525016
Length = 969
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +3
Query: 651 FGPPGTGKSILGK 689
FGPPGTGK++L K
Sbjct: 720 FGPPGTGKTLLAK 732
>05_07_0274 -
28873531-28873644,28873727-28873981,28874111-28874179,
28874277-28874415,28874511-28875076,28875225-28875326,
28875425-28875491,28875576-28876072,28876148-28876212,
28876470-28876567,28876652-28876694,28876870-28876963,
28877325-28877360,28877454-28877542,28877667-28877788,
28878193-28878404
Length = 855
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 636 RASYYFGPPGTGKSILGK 689
R FGPPGTGK++L K
Sbjct: 536 RGILLFGPPGTGKTMLAK 553
>05_06_0101 -
25581800-25581943,25582030-25582095,25582268-25582390,
25582635-25582722,25582823-25582920,25583088-25583147,
25583228-25583288,25583374-25583505,25583957-25584167,
25584515-25584648,25584907-25584989,25585077-25585142,
25585552-25585607,25585701-25585800,25586313-25586421,
25586499-25586653,25586767-25586937,25587129-25587212,
25587261-25587345,25587431-25587477,25587912-25588124
Length = 761
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +3
Query: 585 FTNKIF--HICLLAREYHGRASYYFGPPGTGKSILGKGWGLL 704
F +++F H+ H + +GPPGTGK+++ + G L
Sbjct: 240 FASRVFPPHVVNKLGIKHVKGILLYGPPGTGKTLMARQIGKL 281
>02_05_0752 +
31491462-31491921,31492177-31492271,31492346-31492573,
31493070-31493157,31493275-31493326,31493985-31494050,
31494382-31494536,31494633-31494703,31494820-31495017,
31495103-31495144,31496223-31496324,31496514-31496603,
31496708-31496783,31497299-31497395,31497488-31497557,
31497676-31497852,31498156-31498239,31498971-31499093,
31500143-31500226,31500318-31500502,31500592-31500730,
31500841-31500900,31500969-31501040,31501136-31501197,
31501839-31501945,31501984-31502058,31502800-31503248
Length = 1168
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +3
Query: 651 FGPPGTGKSILGK 689
FGPPGTGK++L K
Sbjct: 725 FGPPGTGKTLLAK 737
>01_01_0886 -
6970112-6970225,6970357-6970473,6970567-6970635,
6970711-6970849,6970964-6971532,6971799-6971966,
6972097-6972184,6972260-6972818,6972924-6973024,
6973113-6973155,6973845-6973938,6974160-6974215,
6974460-6974581,6975306-6975517
Length = 816
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 636 RASYYFGPPGTGKSILGK 689
R FGPPGTGK++L K
Sbjct: 543 RGILLFGPPGTGKTMLAK 560
>11_06_0634 -
25685216-25685329,25685407-25685511,25685681-25685740,
25685827-25685965,25686056-25686240,25686328-25686411,
25686499-25686621,25687088-25687267,25687364-25687433,
25687520-25687616,25687695-25687770,25688259-25688348,
25688383-25688529,25688647-25688715,25689004-25689177,
25689266-25689336,25689409-25689557,25690723-25690774,
25690865-25691120,25691196-25691287,25691420-25691541,
25691909-25692679,25692883-25692940,25693068-25693107,
25694462-25694595,25694685-25694793,25694896-25694991
Length = 1220
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +3
Query: 651 FGPPGTGKSILGK 689
FGPPGTGK++L K
Sbjct: 959 FGPPGTGKTMLAK 971
>07_03_1647 +
28370226-28370369,28370452-28370611,28370704-28370831,
28372512-28372628,28372729-28372782,28372985-28373075,
28373517-28373688,28374452-28374573,28374726-28374817,
28375331-28375373,28375596-28375656,28376367-28376515,
28376659-28376729,28376805-28376975,28377056-28377124,
28377427-28377528,28377629-28377697,28378060-28378138,
28378238-28378337,28378438-28378513,28378715-28378894,
28379430-28379552,28379634-28379717,28380068-28380252,
28380339-28380477,28380585-28380644,28380926-28381030,
28381332-28381445
Length = 1019
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +3
Query: 651 FGPPGTGKSILGK 689
FGPPGTGK++L K
Sbjct: 758 FGPPGTGKTMLAK 770
>03_02_0971 -
12807981-12808094,12808949-12809053,12809236-12809295,
12809399-12809537,12809648-12809832,12809926-12810009,
12810093-12810215,12810617-12810796,12811017-12811092,
12811178-12811277,12811355-12811430,12812155-12812244,
12812342-12812449,12813583-12813651,12813751-12813921,
12814002-12814072,12814263-12814360,12814659-12814719,
12814935-12814971,12815217-12815308,12815428-12815549,
12816281-12816414
Length = 764
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +3
Query: 651 FGPPGTGKSILGK 689
FGPPGTGK++L K
Sbjct: 503 FGPPGTGKTMLAK 515
>01_05_0749 +
24890944-24891146,24891414-24891535,24891633-24891721,
24891813-24891848,24892268-24892367,24892524-24892566,
24892645-24892739,24892978-24893036,24893114-24893613,
24893691-24893772,24893864-24894429,24894520-24894655,
24894750-24894812,24894942-24895172,24895282-24895395
Length = 812
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +3
Query: 651 FGPPGTGKSILGK 689
FGPPGTGK++L K
Sbjct: 509 FGPPGTGKTMLAK 521
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,809,913
Number of Sequences: 37544
Number of extensions: 276099
Number of successful extensions: 851
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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