Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0040
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    24   1.4  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    24   1.4  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    22   4.2  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   4.2  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   4.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.3  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   9.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   9.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   9.7  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 112 HTESSLRSPFTEPKTSNMAGARRVGRGREY 23
           HT  +   P+    T    G  R+ RGR+Y
Sbjct: 321 HTTVNEAQPYVRNTTVPTQGVARMSRGRQY 350


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 112 HTESSLRSPFTEPKTSNMAGARRVGRGREY 23
           HT  +   P+    T    G  R+ RGR+Y
Sbjct: 269 HTTVNEAQPYVRNTTVPTQGVARMSRGRQY 298


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
          protein.
          Length = 136

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 1  ARYVAHVRTHDRDRRAARPPC 63
          A   AHVRTH  ++    P C
Sbjct: 35 ANLTAHVRTHSGEKPFRCPVC 55


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 16  HVRTHDRDRRAARPPC 63
           H+RTH  ++R A P C
Sbjct: 365 HLRTHTGEKRFACPIC 380


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 1   ARYVAHVRTHDRDRRAARPPC 63
           A   AHVRTH  ++    P C
Sbjct: 291 ANLTAHVRTHSGEKPFRCPVC 311


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 290 RDGESRVYPAVRVHNGERDFINDAV 216
           RDG  R    V   N  R+FI  A+
Sbjct: 258 RDGSHRFSTMVSSANRRREFIRSAI 282


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 150 WLCNVSGTHCC 118
           WL N+S T+ C
Sbjct: 135 WLINISATYIC 145


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 150 WLCNVSGTHCC 118
           WL N+S T+ C
Sbjct: 368 WLINISATYIC 378


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 150 WLCNVSGTHCC 118
           WL N+S T+ C
Sbjct: 368 WLINISATYIC 378


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,444
Number of Sequences: 336
Number of extensions: 2542
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)