Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0040
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    27   2.0  
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    27   2.0  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    27   2.6  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    25   7.9  

>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
 Frame = -1

Query: 349 TCGPTPGCT*SFPTRPISLFGMVKVEYIQQYVSITASGI--SSTMQSIGSPMYCRDVTRS 176
           T GP PG T  +PT  ++        Y     S+++S I  +ST+ +  S      V  S
Sbjct: 48  TNGPVPGTTTIYPTSNVASNTSENYPYTGS-KSLSSSSILSNSTISTSSSTPITASVPTS 106

Query: 175 ENAIKIIXVAL*CKRNTLLSMHTESSLRSPFTEPKTSNMAGA 50
            + +    +       T  S  T SS+ S  T P +S+++ +
Sbjct: 107 SSILSNSTIPTTSPVPTTSSTPTSSSILSNSTIPSSSSISAS 148


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = -1

Query: 283 VKVEYIQQYVSITASGISSTMQSIGSPMYCRDVTRSENAIKIIXVAL*CKRNTLLSMHTE 104
           V  EYI++ ++   S    T+  I + +Y   +   E   + +     C RNTLLS+H  
Sbjct: 145 VGAEYIKKVIARLQSYDRRTLDQIAAKLYFYYILFFEKCNRSVE----C-RNTLLSVHRT 199

Query: 103 SSLR 92
           +SLR
Sbjct: 200 ASLR 203


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/27 (40%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
 Frame = -3

Query: 290 RDGESRVYPAVR-VHNGERDFINDAVN 213
           ++G+  ++P+V+ +H GER+ IND V+
Sbjct: 20  KNGQILLHPSVQPLHPGERELINDIVS 46


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 260 VRVHNGERDFINDAVNRVTDVL 195
           V   NG R+++ DAV R  DV+
Sbjct: 499 VESRNGRREYVQDAVRRHGDVI 520


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,363,482
Number of Sequences: 5004
Number of extensions: 40925
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)