Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0040
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55270.1 68416.m06138 MAP kinase phosphatase (MKP1) identical...    31   0.97 
At5g51540.1 68418.m06391 peptidase M3 family protein / thimet ol...    29   3.0  
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)...    29   3.0  
At5g65460.1 68418.m08232 kinesin motor protein-related contains ...    28   5.2  
At2g37290.1 68415.m04574 RabGAP/TBC domain-containing protein lo...    28   5.2  

>At3g55270.1 68416.m06138 MAP kinase phosphatase (MKP1) identical to
           MAP kinase phosphatase (MKP1) GI:13540262 from
           [Arabidopsis thaliana]
          Length = 534

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +3

Query: 3   EVRSARPYSRPRPTRRA-PAMFDVFGSVKGLLKLDSVCXDNN---VFRLH 140
           E R    + +P P R+A P++ +  GS+KG LKL  +   N     F LH
Sbjct: 311 ESRGVNTFLQPSPNRKASPSLAERRGSLKGSLKLPGLADSNRGTPAFTLH 360


>At5g51540.1 68418.m06391 peptidase M3 family protein / thimet
           oligopeptidase family protein low similarity to
           SP|Q99797 Mitochondrial intermediate peptidase,
           mitochondrial precursor (EC 3.4.24.59) {Homo sapiens};
           contains Pfam profile PF01432: Peptidase family M3
          Length = 860

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = +3

Query: 45  RRAPAMFDVFGSVKGLLKLDSVCXDNNVFRLHYKATXIILIAFSLLVTSRQYIGDPID 218
           RRAP    VF S +G  K +    + N F L +    I+++   +++ +  ++ + +D
Sbjct: 763 RRAPVEKPVFMSEEGAAKAEEQRQNENAFLLTWLGLGIVILIEGIILAASGFLPEELD 820


>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
           identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
          Length = 789

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -3

Query: 311 DAADKSVRDGESRVYPAVRVHNGERDFINDAVNRVTDVLSRRDEKRERDQD 159
           D++++ V++GE+  + A    +GE ++  +      D     DEKR+RD D
Sbjct: 23  DSSEEDVKEGEAEEHEAGEDEDGEEEYEEE-----DDDEEEEDEKRKRDAD 68


>At5g65460.1 68418.m08232 kinesin motor protein-related contains
           similarity to kinesin heavy chain
          Length = 1281

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 277 LSPSRTDLSAASERITCNPASAHMSKDKTKXNITNIIXGFXLCYS 411
           LS  + D  +   R+  N A  +   DK+K  +T++I    +CYS
Sbjct: 316 LSQEKVDNPSEFMRVL-NSAFQNRGNDKSKSTVTHLIVSIHICYS 359


>At2g37290.1 68415.m04574 RabGAP/TBC domain-containing protein low
           similarity to Rab6 GTPase activating protein, GAPCenA
           [Homo sapiens] GI:12188746; contains Pfam profile
           PF00566: TBC domain
          Length = 882

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -3

Query: 278 SRVYPAVRVHNGERDFINDAVNRVTDVLSRRDEKRERDQDN 156
           SRV       NG+++ ++D  + + + LS  +E  E D+D+
Sbjct: 238 SRVKNVKSTKNGQKNIVDDHASSIKESLSSIEESGENDRDS 278


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,515,669
Number of Sequences: 28952
Number of extensions: 221303
Number of successful extensions: 594
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)