Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0039
(751 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0362 - 22366668-22367516 239 2e-63
03_06_0626 - 35169352-35169546,35169736-35169948,35170102-351702... 238 4e-63
04_04_0143 - 23091613-23092467 237 9e-63
07_01_1055 - 9253936-9254130,9254271-9254483,9254588-9254758,925... 204 4e-53
03_06_0437 - 33912326-33912520,33912870-33912998,33913147-339133... 167 8e-42
03_06_0427 - 33857008-33857137,33857224-33857258,33857966-338580... 83 2e-16
11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200... 29 5.2
06_03_0385 - 20234160-20234798,20234888-20235238 28 9.1
>02_04_0362 - 22366668-22367516
Length = 282
Score = 239 bits (585), Expect = 2e-63
Identities = 115/216 (53%), Positives = 154/216 (71%)
Frame = +1
Query: 28 AAQLFNRIXXXXXXXXXXXXXXNSALYNVDGGHRAVIFDRFAGVKQLVVGEGTHFFIPWV 207
AA L ++ ++ALY VDGG RAVIFDRF GV EGTHF +PW+
Sbjct: 8 AASLLTKLAQAAAGLGIAASAASTALYTVDGGQRAVIFDRFRGVLPETSSEGTHFIVPWL 67
Query: 208 QRPIIFDIRSRPRNVPTITGSKDLQNVNITLRILFXPVPDQLPRIYTILGIDYDERVLPS 387
Q+P IFDIR+RP + + +G+KDLQ V++TLR+L P D+LP I+T LG++YDE+VLPS
Sbjct: 68 QKPFIFDIRTRPHSFSSTSGTKDLQMVSLTLRVLARPDIDRLPDIFTSLGLEYDEKVLPS 127
Query: 388 ITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILDDISITHLTFGKEFTQ 567
I +EVLKAVVAQF+A +L+T+R VS V DSL RAA+F ++LDD++ITHL +G EF+Q
Sbjct: 128 IGNEVLKAVVAQFNADQLLTERPHVSALVRDSLIRRAAEFNIVLDDVAITHLAYGPEFSQ 187
Query: 568 AVELKQVAQQEAEKARFLXEKAEHQKKXXXXXXXGD 675
AVE KQVAQQEAE++RFL +AE +++ G+
Sbjct: 188 AVEKKQVAQQEAERSRFLVARAEQERRAAIVRAEGE 223
>03_06_0626 -
35169352-35169546,35169736-35169948,35170102-35170272,
35170826-35170942,35171078-35171233
Length = 283
Score = 238 bits (582), Expect = 4e-63
Identities = 110/193 (56%), Positives = 147/193 (76%)
Frame = +1
Query: 97 SALYNVDGGHRAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPTITGSKD 276
++LYNV+GGHRA++F+R G+K V EGTHF IPW +RPII+D+R+RP V + +GS+D
Sbjct: 29 NSLYNVEGGHRAIVFNRLEGIKDKVYPEGTHFMIPWFERPIIYDVRARPNLVESTSGSRD 88
Query: 277 LQNVNITLRILFXPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQRE 456
LQ V I LR+L P+P++LP IY LG +++ERVLPSI E LKAVVAQ++A +LITQRE
Sbjct: 89 LQMVRIGLRVLTRPLPEKLPTIYRSLGENFNERVLPSIIHETLKAVVAQYNASQLITQRE 148
Query: 457 IVSQKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLXEKAE 636
VS+++ LTERA+ F + LDD+SIT L+FGKEFT A+E KQVA QEAE+A+F+ EKAE
Sbjct: 149 AVSREIRKILTERASNFNIALDDVSITSLSFGKEFTHAIEAKQVAAQEAERAKFIVEKAE 208
Query: 637 HQKKXXXXXXXGD 675
K+ G+
Sbjct: 209 QDKRSAIIRAQGE 221
>04_04_0143 - 23091613-23092467
Length = 284
Score = 237 bits (579), Expect = 9e-63
Identities = 111/194 (57%), Positives = 149/194 (76%)
Frame = +1
Query: 94 NSALYNVDGGHRAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPTITGSK 273
+++LY VDGG RAVIFDRF GV VGEGTHF +PW+Q+P +FDIR+RP N + +G+K
Sbjct: 29 SASLYTVDGGERAVIFDRFRGVLPETVGEGTHFLVPWLQKPFVFDIRTRPHNFSSNSGTK 88
Query: 274 DLQNVNITLRILFXPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQR 453
DLQ VN+TLR+L P LP I+T LG++YD++VLPSI +EVLKAVVAQF+A +L+T+R
Sbjct: 89 DLQMVNLTLRLLSRPDVVHLPTIFTSLGLEYDDKVLPSIGNEVLKAVVAQFNADQLLTER 148
Query: 454 EIVSQKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLXEKA 633
VS V D+L RA +F +ILDD++ITHL++G EF+QAVE KQVAQQEAE+++FL KA
Sbjct: 149 PHVSALVRDALIRRAREFNIILDDVAITHLSYGIEFSQAVEKKQVAQQEAERSKFLVAKA 208
Query: 634 EHQKKXXXXXXXGD 675
E +++ G+
Sbjct: 209 EQERRAAIVRAEGE 222
>07_01_1055 -
9253936-9254130,9254271-9254483,9254588-9254758,
9255743-9255859,9257021-9257186,9258885-9258934,
9259095-9259268
Length = 361
Score = 204 bits (499), Expect = 4e-53
Identities = 98/175 (56%), Positives = 128/175 (73%)
Frame = +1
Query: 151 AGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPTITGSKDLQNVNITLRILFXPVPDQ 330
+G V EGTHF IPW +RPII+D+R+RP V + +GS+DLQ V I LR+L P+P++
Sbjct: 125 SGTIYQVYPEGTHFMIPWFERPIIYDVRARPNLVESTSGSRDLQMVKIGLRVLTRPMPEK 184
Query: 331 LPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFG 510
LP IY LG +++ERVLPSI E LKAVVAQ++A +LITQRE VS+++ LTERA F
Sbjct: 185 LPTIYRTLGENFNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERARNFN 244
Query: 511 LILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLXEKAEHQKKXXXXXXXGD 675
+ LDD+SIT L+FGKEFT A+E KQVA QEAE+A+F+ EKAE K+ G+
Sbjct: 245 IALDDVSITSLSFGKEFTHAIEAKQVAAQEAERAKFIVEKAEQDKRSAIIRAQGE 299
Score = 38.3 bits (85), Expect = 0.006
Identities = 13/22 (59%), Positives = 20/22 (90%)
Frame = +1
Query: 97 SALYNVDGGHRAVIFDRFAGVK 162
++LYNV+GGHRA++F+R G+K
Sbjct: 35 NSLYNVEGGHRAIVFNRIQGIK 56
>03_06_0437 -
33912326-33912520,33912870-33912998,33913147-33913317,
33913877-33913993,33914150-33914800
Length = 420
Score = 167 bits (406), Expect = 8e-42
Identities = 85/155 (54%), Positives = 113/155 (72%)
Frame = +1
Query: 163 QLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPTITGSKDLQNVNITLRILFXPVPDQLPRI 342
Q V EGT F I +RPII+D+R+RP V + +GS+DLQ V I LR+L P+P++LP I
Sbjct: 216 QEVYPEGTQFMILLFERPIIYDVRARPNLVESTSGSRDLQMVKIGLRVLTRPLPEKLPTI 275
Query: 343 YTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILD 522
Y LG +++ERVLPSI E LKAVVAQ++A +LITQRE VS+++ LTERA+ F + LD
Sbjct: 276 YRSLGENFNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERASNFNIALD 335
Query: 523 DISITHLTFGKEFTQAVELKQVAQQEAEKARFLXE 627
D+SIT L+FGKEFT A+E K Q EA+ A+ + E
Sbjct: 336 DVSITSLSFGKEFTHAIEAK---QGEAKSAQLIGE 367
>03_06_0427 -
33857008-33857137,33857224-33857258,33857966-33858046,
33858213-33858338,33858410-33858568,33858797-33858934,
33859084-33859155,33859359-33860273
Length = 551
Score = 83.0 bits (196), Expect = 2e-16
Identities = 47/110 (42%), Positives = 67/110 (60%)
Frame = +1
Query: 127 RAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPTITGSKDLQNVNITLRI 306
R + ++ + QL+ E +HF IPW +R IFD+ RP V + +GS+DLQ V L +
Sbjct: 323 REICNNKAVRLLQLLNPEKSHFSIPWFERLTIFDVCPRPNLVESTSGSRDLQMVRPGLGV 382
Query: 307 LFXPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQRE 456
L P+P + Y LG ++ ERVL S+ E LKAVVAQ++A +LI RE
Sbjct: 383 LTRPLPTK----YRSLGDNFCERVLTSLMHETLKAVVAQYNASQLIIPRE 428
Score = 49.6 bits (113), Expect = 3e-06
Identities = 24/64 (37%), Positives = 41/64 (64%)
Frame = +1
Query: 457 IVSQKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLXEKAE 636
+++ ++++L AQ+ + I +F KEFT A+E KQV +QEA++A+F+ EKAE
Sbjct: 402 VLTSLMHETLKAVVAQYNA--SQLIIPRESFRKEFTHAIETKQVDEQEAQRAKFIVEKAE 459
Query: 637 HQKK 648
K+
Sbjct: 460 QHKR 463
>11_04_0236 +
15215386-15216197,15216854-15218888,15219131-15220017,
15222420-15226194
Length = 2502
Score = 28.7 bits (61), Expect = 5.2
Identities = 29/96 (30%), Positives = 45/96 (46%)
Frame = -2
Query: 414 NCFQNF*GNRWKYSFIIINTKNSVNSW*LIRNWXEEDTKCDVNILKIFTSSNSRNISGSR 235
N Q F N+ +Y FI+I+ +NSW IR+ +D C K+ T+S N++
Sbjct: 261 NELQEFLQNK-RY-FIVIDGLWDINSWNKIRSALPDD-NCG---SKVVTTSGISNVARDV 314
Query: 234 PDVKYNWPLDPRNEEMCAFTNN*LLNTSKSIEDNSS 127
DV PL N + T ++ SK +E S+
Sbjct: 315 GDVYNLQPLSHGNSKKLLSTRL-YVDESKCLESTSA 349
>06_03_0385 - 20234160-20234798,20234888-20235238
Length = 329
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 205 VQRPIIFDIRSRPRNVPTITGSKDLQNVNITLRILFXPVPDQLPR 339
V PII D++ P + T G+ + +IT RI P P PR
Sbjct: 271 VANPIIIDMKYCPNKICTANGNSKVTIKDITSRI--SPAPPPRPR 313
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,282,734
Number of Sequences: 37544
Number of extensions: 292001
Number of successful extensions: 729
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -