Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0039
(751 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-9|AAK27865.1| 275|Caenorhabditis elegans Mitochondrial... 297 4e-81
U28940-7|AAA68353.2| 294|Caenorhabditis elegans Mitochondrial p... 202 2e-52
U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protei... 42 5e-04
U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protei... 42 5e-04
Z81072-4|CAB03018.2| 327|Caenorhabditis elegans Hypothetical pr... 36 0.031
AC006638-4|AAP82654.1| 312|Caenorhabditis elegans Stomatin prot... 36 0.031
AC006638-3|AAK85483.1| 367|Caenorhabditis elegans Stomatin prot... 36 0.031
U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type chlo... 31 1.2
AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type chlo... 31 1.2
AF039052-11|AAF98632.1| 583|Caenorhabditis elegans Hypothetical... 29 3.5
Z67879-2|CAA91788.2| 156|Caenorhabditis elegans Hypothetical pr... 29 4.7
AC006638-5|AAP82655.1| 175|Caenorhabditis elegans Stomatin prot... 29 4.7
Z69902-6|CAD89723.1| 684|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z69902-5|CAA93762.1| 725|Caenorhabditis elegans Hypothetical pr... 28 6.2
AL132895-2|CAC14404.1| 613|Caenorhabditis elegans Hypothetical ... 28 6.2
U53344-3|AAA96224.1| 702|Caenorhabditis elegans Hypothetical pr... 28 8.1
AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical ... 28 8.1
AF036700-2|AAB88365.1| 550|Caenorhabditis elegans Hypothetical ... 28 8.1
>AC087079-9|AAK27865.1| 275|Caenorhabditis elegans Mitochondrial
prohibitin complexprotein 1 protein.
Length = 275
Score = 297 bits (730), Expect = 4e-81
Identities = 148/216 (68%), Positives = 168/216 (77%)
Frame = +1
Query: 28 AAQLFNRIXXXXXXXXXXXXXXNSALYNVDGGHRAVIFDRFAGVKQLVVGEGTHFFIPWV 207
A +L R+ +ALYNVDGG RAVIFDRF+GVK VVGEGTHF IPWV
Sbjct: 5 AQKLLGRLGTVGVGLSIAGGIAQTALYNVDGGQRAVIFDRFSGVKNEVVGEGTHFLIPWV 64
Query: 208 QRPIIFDIRSRPRNVPTITGSKDLQNVNITLRILFXPVPDQLPRIYTILGIDYDERVLPS 387
Q+PIIFDIRS PR V TITGSKDLQNVNITLRIL P PD+LP IY +G+DY ERVLPS
Sbjct: 65 QKPIIFDIRSTPRAVTTITGSKDLQNVNITLRILHRPSPDRLPNIYLNIGLDYAERVLPS 124
Query: 388 ITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILDDISITHLTFGKEFTQ 567
IT+EVLKAVVAQFDA E+ITQRE+VSQ+ + +L ERAAQFGL+LDDI+ITHL FG+EFT+
Sbjct: 125 ITNEVLKAVVAQFDAHEMITQREVVSQRASVALRERAAQFGLLLDDIAITHLNFGREFTE 184
Query: 568 AVELKQVAQQEAEKARFLXEKAEHQKKXXXXXXXGD 675
AVE+KQVAQQEAEKAR+L EKAE K GD
Sbjct: 185 AVEMKQVAQQEAEKARYLVEKAEQMKIAAVTTAEGD 220
>U28940-7|AAA68353.2| 294|Caenorhabditis elegans Mitochondrial
prohibitin complexprotein 2 protein.
Length = 294
Score = 202 bits (494), Expect = 2e-52
Identities = 98/192 (51%), Positives = 134/192 (69%)
Frame = +1
Query: 100 ALYNVDGGHRAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPTITGSKDL 279
+++ V+ GHRA++F+R G+ + EG HF IPW Q PII+DIR+RP + + TGSKDL
Sbjct: 39 SMFTVEAGHRAIMFNRIGGLSTDLYKEGLHFRIPWFQYPIIYDIRARPNQIRSPTGSKDL 98
Query: 280 QNVNITLRILFXPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREI 459
Q VNI LR+L P P+ L IY LG +++ERVLPSI +EVLK VVA+F+A +LITQR+
Sbjct: 99 QMVNIGLRVLSRPNPEHLVHIYRTLGQNWEERVLPSICNEVLKGVVAKFNASQLITQRQQ 158
Query: 460 VSQKVNDSLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLXEKAEH 639
VS V +L ERA F +ILDD+S+T L F +++ AVE KQVA QEA++A F E+A+
Sbjct: 159 VSMLVRKTLIERALDFNIILDDVSLTELAFSPQYSAAVEAKQVAAQEAQRATFYVERAKQ 218
Query: 640 QKKXXXXXXXGD 675
QK+ G+
Sbjct: 219 QKQEKIVQAEGE 230
>U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protein
1, isoform a protein.
Length = 330
Score = 41.9 bits (94), Expect = 5e-04
Identities = 35/160 (21%), Positives = 73/160 (45%), Gaps = 1/160 (0%)
Frame = +1
Query: 127 RAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPT-ITGSKDLQNVNITLR 303
RAV+F R + V G G F IP + + D+R NVP+ S+D V++
Sbjct: 72 RAVVF-RLGRLVPDVKGPGIFFIIPCIDTFLNIDLRVASYNVPSQEILSRDSVTVSVD-A 129
Query: 304 ILFXPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDS 483
+++ V D I +++G+ + L+ ++ E+++ RE +S + S
Sbjct: 130 VVYFKVFDP---ITSVVGVGNATDSTKLLAQTTLRTILGTHTLSEILSDREKISADMKIS 186
Query: 484 LTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEA 603
L E +G+ ++ + + + + +A+ + A ++A
Sbjct: 187 LDEATEPWGIKVERVELRDVRLPSQMQRAMAAEAEATRDA 226
>U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protein
1, isoform b protein.
Length = 325
Score = 41.9 bits (94), Expect = 5e-04
Identities = 35/160 (21%), Positives = 73/160 (45%), Gaps = 1/160 (0%)
Frame = +1
Query: 127 RAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPT-ITGSKDLQNVNITLR 303
RAV+F R + V G G F IP + + D+R NVP+ S+D V++
Sbjct: 72 RAVVF-RLGRLVPDVKGPGIFFIIPCIDTFLNIDLRVASYNVPSQEILSRDSVTVSVD-A 129
Query: 304 ILFXPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDS 483
+++ V D I +++G+ + L+ ++ E+++ RE +S + S
Sbjct: 130 VVYFKVFDP---ITSVVGVGNATDSTKLLAQTTLRTILGTHTLSEILSDREKISADMKIS 186
Query: 484 LTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEA 603
L E +G+ ++ + + + + +A+ + A ++A
Sbjct: 187 LDEATEPWGIKVERVELRDVRLPSQMQRAMAAEAEATRDA 226
>Z81072-4|CAB03018.2| 327|Caenorhabditis elegans Hypothetical
protein F30A10.5 protein.
Length = 327
Score = 35.9 bits (79), Expect = 0.031
Identities = 24/150 (16%), Positives = 70/150 (46%), Gaps = 2/150 (1%)
Frame = +1
Query: 169 VVGEGTHFFIPWVQR-PIIFDIRSRPRNVPTITGSKDLQNVNITLR-ILFXPVPDQLPRI 342
++ G +F +P + + + ++R +P G+ + NV + L +L+ V D
Sbjct: 58 ILEPGLNFLLPIIDKIKFVQNLREIAIEIPE-QGAITIDNVQLRLDGVLYLRVFDPYKAC 116
Query: 343 YTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILD 522
G+D E + + +++ V + + + +RE++++ + ++ + +A +G+
Sbjct: 117 DASYGVDDPEFAVTQLAQTTMRSEVGKINLDTVFKERELLNENIVFAINKASAPWGIQCM 176
Query: 523 DISITHLTFGKEFTQAVELKQVAQQEAEKA 612
I + + +A++++ A+++ A
Sbjct: 177 RYEIRDMQMPSKIQEAMQMQVEAERKKRAA 206
>AC006638-4|AAP82654.1| 312|Caenorhabditis elegans Stomatin protein
5, isoform b protein.
Length = 312
Score = 35.9 bits (79), Expect = 0.031
Identities = 34/163 (20%), Positives = 71/163 (43%), Gaps = 1/163 (0%)
Frame = +1
Query: 127 RAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNV-PTITGSKDLQNVNITLR 303
RAVIF +K G G F +P + I D+R +V P S+D V++
Sbjct: 142 RAVIFRLGRLIKGGTKGPGLFFVLPCIDTMKIVDLRVLSFDVPPQEILSRDSVTVSVE-A 200
Query: 304 ILFXPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDS 483
+++ V + + + + + R+L T L+ V+ E++++R+ ++
Sbjct: 201 VIYFRVSNPVISVTNVNDAQFSTRLLAQTT---LRNVLGTKTLSEMLSERDAIASISEKV 257
Query: 484 LTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKA 612
L E +G+ ++ + I + + +++ K A + A A
Sbjct: 258 LDEGTDPWGVKVERVEIKDIRLPHQLMRSMAAKAEAVRRARAA 300
>AC006638-3|AAK85483.1| 367|Caenorhabditis elegans Stomatin protein
5, isoform a protein.
Length = 367
Score = 35.9 bits (79), Expect = 0.031
Identities = 34/163 (20%), Positives = 71/163 (43%), Gaps = 1/163 (0%)
Frame = +1
Query: 127 RAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNV-PTITGSKDLQNVNITLR 303
RAVIF +K G G F +P + I D+R +V P S+D V++
Sbjct: 142 RAVIFRLGRLIKGGTKGPGLFFVLPCIDTMKIVDLRVLSFDVPPQEILSRDSVTVSVE-A 200
Query: 304 ILFXPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDS 483
+++ V + + + + + R+L T L+ V+ E++++R+ ++
Sbjct: 201 VIYFRVSNPVISVTNVNDAQFSTRLLAQTT---LRNVLGTKTLSEMLSERDAIASISEKV 257
Query: 484 LTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKA 612
L E +G+ ++ + I + + +++ K A + A A
Sbjct: 258 LDEGTDPWGVKVERVEIKDIRLPHQLMRSMAAKAEAVRRARAA 300
>U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type
chloride channel protein3, isoform a protein.
Length = 1001
Score = 30.7 bits (66), Expect = 1.2
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Frame = +1
Query: 301 RILFXPVPDQLPRIY---TILGIDYDERVLPSITSEVLKAVVAQFDAGELIT-QREIVSQ 468
R L PV P++ T+ G+ +E +T E +A+ FDA L T +RE+ +
Sbjct: 668 RFLIVPVAKNGPQVAKNETLTGLS-EENARKILTVEEKQAL---FDAASLATPKREMSGK 723
Query: 469 KVNDSLTERAAQFGLILDDISITHLTFGKE 558
+N E G I SITHL+FG++
Sbjct: 724 TINPVHIESHHTIGDIFR--SITHLSFGRQ 751
>AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type
chloride channel CLH-3b protein.
Length = 1001
Score = 30.7 bits (66), Expect = 1.2
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Frame = +1
Query: 301 RILFXPVPDQLPRIY---TILGIDYDERVLPSITSEVLKAVVAQFDAGELIT-QREIVSQ 468
R L PV P++ T+ G+ +E +T E +A+ FDA L T +RE+ +
Sbjct: 668 RFLIVPVAKNGPQVAKNETLTGLS-EENARKILTVEEKQAL---FDAASLATPKREMSGK 723
Query: 469 KVNDSLTERAAQFGLILDDISITHLTFGKE 558
+N E G I SITHL+FG++
Sbjct: 724 TINPVHIESHHTIGDIFR--SITHLSFGRQ 751
>AF039052-11|AAF98632.1| 583|Caenorhabditis elegans Hypothetical
protein T22D1.11 protein.
Length = 583
Score = 29.1 bits (62), Expect = 3.5
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 199 PWVQRPIIFDIRSRPRNVPTITG 267
P +Q ++ D +P+N+PT+TG
Sbjct: 315 PLIQNVLVQDFYEKPKNIPTLTG 337
>Z67879-2|CAA91788.2| 156|Caenorhabditis elegans Hypothetical
protein C05E7.3 protein.
Length = 156
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 112 VDGGHRAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPTI 261
+ GG FDRF K+ + GE I W +R +R+ R++P I
Sbjct: 31 IGGGDDMAHFDRFITHKRAINGELRRSSILWGKRAHASGLRNFERDIPLI 80
>AC006638-5|AAP82655.1| 175|Caenorhabditis elegans Stomatin protein
5, isoform c protein.
Length = 175
Score = 28.7 bits (61), Expect = 4.7
Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Frame = +1
Query: 127 RAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNV-PTITGSKDLQNVNITLR 303
RAVIF +K G G F +P + I D+R +V P S+D V++
Sbjct: 58 RAVIFRLGRLIKGGTKGPGLFFVLPCIDTMKIVDLRVLSFDVPPQEILSRDSVTVSVE-A 116
Query: 304 ILFXPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVS 465
+++ V + + + + + R+L T L+ V+ E++++R+ ++
Sbjct: 117 VIYFRVSNPVISVTNVNDAQFSTRLLAQTT---LRNVLGTKTLSEMLSERDAIA 167
>Z69902-6|CAD89723.1| 684|Caenorhabditis elegans Hypothetical
protein C47D12.6b protein.
Length = 684
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/73 (26%), Positives = 34/73 (46%)
Frame = +1
Query: 358 IDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILDDISIT 537
I+Y+E ++ +V KA +AQF+ +I +E + VN + A + + LD +
Sbjct: 606 IEYEENCGDTMNKQVRKAQLAQFNFILVIGAKEKENGTVNVRTRDNAVRGEVALDKLISK 665
Query: 538 HLTFGKEFTQAVE 576
F E+ E
Sbjct: 666 FRRFADEYVADTE 678
>Z69902-5|CAA93762.1| 725|Caenorhabditis elegans Hypothetical
protein C47D12.6a protein.
Length = 725
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/73 (26%), Positives = 34/73 (46%)
Frame = +1
Query: 358 IDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILDDISIT 537
I+Y+E ++ +V KA +AQF+ +I +E + VN + A + + LD +
Sbjct: 647 IEYEENCGDTMNKQVRKAQLAQFNFILVIGAKEKENGTVNVRTRDNAVRGEVALDKLISK 706
Query: 538 HLTFGKEFTQAVE 576
F E+ E
Sbjct: 707 FRRFADEYVADTE 719
>AL132895-2|CAC14404.1| 613|Caenorhabditis elegans Hypothetical
protein Y59A8A.2 protein.
Length = 613
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 406 KAVVAQFDAGELITQREIVS-QKVNDSLTERAAQFGLILDDIS 531
K +V +F A E + ++++ S +K++ LTE GL+L D +
Sbjct: 465 KHLVERFSANEELIEQKLTSIEKLHQLLTELGGDSGLLLSDFN 507
>U53344-3|AAA96224.1| 702|Caenorhabditis elegans Hypothetical
protein T07H6.4 protein.
Length = 702
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -3
Query: 215 GLWTQGMKKCVPSPTTSCLTPANR-SKIT 132
G+W+ + C+P T C P++R SK+T
Sbjct: 366 GVWSSPIPYCIPIQATDCPFPSSRPSKLT 394
>AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical
protein Y116F11B.3 protein.
Length = 1042
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = -3
Query: 260 IVGTFLGRDLMSNIIGLWTQGMKKCVPSPTTSCLTPANRSKITAL*PPSTLYNAE 96
+ G + RDL+ IG+W G V TT+ T +N + PSTLY+ E
Sbjct: 970 VPGLKVARDLVDQNIGVWLGGQ---VNITTTTATTTSNSTSY-----PSTLYSLE 1016
>AF036700-2|AAB88365.1| 550|Caenorhabditis elegans Hypothetical
protein M04G7.2 protein.
Length = 550
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 156 TSKSIEDNSSVTTVDIIQCRIDNTSNQCH 70
TSKS+E+NSS TT D I D + + +
Sbjct: 219 TSKSLEENSSETTNDSISLADDEETREAY 247
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,238,374
Number of Sequences: 27780
Number of extensions: 267411
Number of successful extensions: 755
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -