Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0038
         (360 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   152   2e-38
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   147   5e-37
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    29   0.16 
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    25   2.7  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   3.5  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    24   8.2  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      24   8.2  
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    24   8.2  
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    24   8.2  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  152 bits (368), Expect = 2e-38
 Identities = 69/106 (65%), Positives = 85/106 (80%)
 Frame = +3

Query: 42  VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 221
           VL   ++D+  +LAA +H+G++N+  +ME YV+KRR+DG H+INL +TWEKLVLAAR + 
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 222 AIENPADVFVISSRPFGQRAVLKFAAHTGATPIXGRXTPGAFTNQI 359
            IENPADV VISSRP+G RAVLKFAAHTGAT I GR TPG FTN I
Sbjct: 70  TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYI 115


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  147 bits (356), Expect = 5e-37
 Identities = 65/110 (59%), Positives = 86/110 (78%)
 Frame = +3

Query: 30  GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 209
           G  ++L   +ED+ ++LAA  H+G++N+  +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 210 RAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIXGRXTPGAFTNQI 359
           R +  IENPADV V+S+R +G RAVLKFAAHTGAT I GR TPG FTN I
Sbjct: 65  RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYI 114


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 29.5 bits (63), Expect = 0.16
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = +3

Query: 165 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIXGRXTPG 341
           V+++R TW +LV+  +  + + N  ++ +I++    +  V+ FA H           PG
Sbjct: 89  VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 6/25 (24%), Positives = 17/25 (68%)
 Frame = -1

Query: 249 RTHQRGSRWLRQHEQPEQVFPRYDA 175
           R H++ + W ++HE+P+ +   +++
Sbjct: 571 RFHKKYTTWFQRHEEPKMITDEFES 595


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 133  MSTNDVLMVPM*STCVVPGKNLFWLLVL 216
            M+ N V  + +  T   PG N FW L++
Sbjct: 920  MTLNPVFQIGLNGTTHSPGNNSFWPLII 947


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -2

Query: 218 DSTSSQ--NKFFPGTTQVDHMGTISTSFVDIGLHLEVN 111
           DSTS    NK+  G   V  +   S S  DIGLH E +
Sbjct: 355 DSTSRAIVNKYSLGNN-VSTVNPFSKSLYDIGLHAETD 391


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 18 ATMSGGLDVLALNEEDVT 71
          +T+SG +DV+ + +ED T
Sbjct: 21 STLSGAIDVIVVEQEDKT 38


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -2

Query: 242 ISGVLDG-YDSTSSQNKFFPGTTQVDHM 162
           IS   DG Y+  +     +PGTT +DH+
Sbjct: 194 ISHTTDGVYEGIAIGGDRYPGTTFIDHL 221


>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 418

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 48  ALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKL 197
           A   E+++   +A   +   +V+F ME  V+K  A      NL+   EKL
Sbjct: 19  AWGSENISNSNSAIPSI-TNDVSFSMEASVWKENALNLDTFNLKDINEKL 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,480,172
Number of Sequences: 5004
Number of extensions: 29371
Number of successful extensions: 56
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)