Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0038
(360 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 151 1e-37
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 148 1e-36
01_06_0364 - 28749825-28750053,28750442-28750621,28751018-287511... 30 0.48
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 1.5
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 28 1.9
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 1.9
04_04_0518 - 25858336-25859537,25859919-25860749,25861640-25861727 28 2.5
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 28 2.5
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 28 2.5
06_03_0424 - 20648938-20649564,20650588-20650902 27 4.4
07_03_0133 + 14053076-14053280,14053524-14053642 27 5.9
05_01_0087 + 574623-574687,574797-574871,574987-575101 27 5.9
04_04_1376 + 33058306-33059763,33059851-33059991,33060594-330606... 27 5.9
05_04_0228 - 19224901-19224991,19225095-19225219,19225293-192254... 26 7.7
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 151 bits (367), Expect = 1e-37
Identities = 71/116 (61%), Positives = 87/116 (75%)
Frame = +3
Query: 12 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 191
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 192 KLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIXGRXTPGAFTNQI 359
KL LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA I GR TPG FTNQ+
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQL 116
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 148 bits (359), Expect = 1e-36
Identities = 68/105 (64%), Positives = 82/105 (78%)
Frame = +3
Query: 45 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 224
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 225 IENPADVFVISSRPFGQRAVLKFAAHTGATPIXGRXTPGAFTNQI 359
IENP D+ V S+RP+GQRAVLKFA +TGA I GR TPG FTNQ+
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQL 116
>01_06_0364 -
28749825-28750053,28750442-28750621,28751018-28751147,
28751442-28751756,28752033-28752075,28752108-28752500
Length = 429
Score = 30.3 bits (65), Expect = 0.48
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 254 LITALRSACCTEVCRAHRCYAYXGAFXTRCF 346
L+ LR T+V RAHRC A T CF
Sbjct: 97 LLPLLRRRGATDVVRAHRCIPLHPALITSCF 127
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 112 TFSAPRWVVAASILVTSSSLRASTSNP 32
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 28.3 bits (60), Expect = 1.9
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -1
Query: 294 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 139
+ SV + D+ ++ RT RGS L QPE + PRY+ H VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.3 bits (60), Expect = 1.9
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 119 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSH 226
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>04_04_0518 - 25858336-25859537,25859919-25860749,25861640-25861727
Length = 706
Score = 27.9 bits (59), Expect = 2.5
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +2
Query: 122 DGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*CVRHLITALRSACCTEVCRA 301
DG Q+ C + C L+ + +CSG CC++ PR + +T + +++ R
Sbjct: 153 DGGTGYQSGC-FSQCRDLSGLVDGSCSGMGCCQT-TIPRGMYYYNVTFDKRFNTSQISRF 210
Query: 302 HRC 310
RC
Sbjct: 211 GRC 213
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.9 bits (59), Expect = 2.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 155 WYPCDQLASYLGKTCSGCSCCRSHREP 235
++PC +GKT S C + HR P
Sbjct: 615 YHPCQPTVRLMGKTVSVCERSKEHRVP 641
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 27.9 bits (59), Expect = 2.5
Identities = 22/78 (28%), Positives = 27/78 (34%)
Frame = +2
Query: 65 CHQNACCXHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*C 244
CH C P GR+ P G + CD A+ G TC C H+ P C
Sbjct: 324 CHAGKCGGCPLQGRRT-CPCGKKDYPSL----DCDAEAATCGSTCEKVLGCGRHKCPERC 378
Query: 245 VRHLITALRSACCTEVCR 298
R T+ CR
Sbjct: 379 HRGSCVETCRLVITKSCR 396
>06_03_0424 - 20648938-20649564,20650588-20650902
Length = 313
Score = 27.1 bits (57), Expect = 4.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 232 TPLMCSSSHHGPSVSVLY*SLP 297
TP SSSHH P +S L+ LP
Sbjct: 75 TPSSISSSHHTPPLSALHIMLP 96
>07_03_0133 + 14053076-14053280,14053524-14053642
Length = 107
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +2
Query: 194 TCSGCSCCRSHREPR*CVRHLITALRSACCTEVCR 298
T + C CC S R CV + ++ C CR
Sbjct: 26 TAAQCGCCISSRAKACCVGCIAAGGSNSVCKNTCR 60
>05_01_0087 + 574623-574687,574797-574871,574987-575101
Length = 84
Score = 26.6 bits (56), Expect = 5.9
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +2
Query: 188 GKTCSGCSCC 217
G +CSGCSCC
Sbjct: 72 GTSCSGCSCC 81
>04_04_1376 +
33058306-33059763,33059851-33059991,33060594-33060644,
33061094-33061171,33061245-33061388,33061871-33062002
Length = 667
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 46 SPSTRKMSPKCLLXPPILGQKM 111
SPST SP CLL P L +++
Sbjct: 258 SPSTNLPSPNCLLVPSTLDEQL 279
>05_04_0228 -
19224901-19224991,19225095-19225219,19225293-19225410,
19225554-19225618,19225760-19225839,19225942-19226005,
19227341-19227480,19227571-19227694,19227781-19227840,
19227922-19227990,19228139-19228288,19229182-19229289,
19229573-19229648,19229960-19230054,19231729-19231803,
19231923-19232043,19232136-19232308,19232647-19232813,
19232944-19233301
Length = 752
Score = 26.2 bits (55), Expect = 7.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 233 PR*CVRHLITALRSACCTEVCRAHRCYAYXGA 328
P C RH AL T+V HRC+++ A
Sbjct: 70 PEICCRHSQAALAREVRTQVDALHRCFSWRHA 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,501,977
Number of Sequences: 37544
Number of extensions: 224235
Number of successful extensions: 550
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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