Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0038
         (360 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               178   1e-45
SB_36758| Best HMM Match : NACHT (HMM E-Value=0.00044)                 28   2.6  
SB_6137| Best HMM Match : NACHT (HMM E-Value=0.00017)                  28   2.6  
SB_49920| Best HMM Match : MANEC (HMM E-Value=0.73)                    27   3.5  
SB_36649| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.5  
SB_33032| Best HMM Match : Prothymosin (HMM E-Value=0.78)              27   3.5  
SB_52403| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.6  
SB_52148| Best HMM Match : EGF (HMM E-Value=0)                         27   6.1  
SB_6061| Best HMM Match : NACHT (HMM E-Value=0.00065)                  27   6.1  
SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  
SB_5916| Best HMM Match : R3H (HMM E-Value=2.9e-10)                    26   8.0  
SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  178 bits (434), Expect = 1e-45
 Identities = 80/112 (71%), Positives = 96/112 (85%)
 Frame = +3

Query: 24  MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVL 203
           MSGGLD+L L EEDV K LAA  HLGA N +FQME YVYKR++DG ++IN+++TWEKL+L
Sbjct: 1   MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60

Query: 204 AARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIXGRXTPGAFTNQI 359
           AAR +V IENPADV VIS+RP+GQRA+LK+A+HTGATPI GR TPG FTNQI
Sbjct: 61  AARIIVTIENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQI 112


>SB_36758| Best HMM Match : NACHT (HMM E-Value=0.00044)
          Length = 899

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 254 DDEHISGVLDGYDSTSSQNK 195
           ++EHI+ VLDGYD   S +K
Sbjct: 60  NEEHIAFVLDGYDELPSSSK 79


>SB_6137| Best HMM Match : NACHT (HMM E-Value=0.00017)
          Length = 1243

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 254 DDEHISGVLDGYDSTSSQNK 195
           ++EHI+ VLDGYD   S +K
Sbjct: 346 NEEHIAFVLDGYDELPSSSK 365


>SB_49920| Best HMM Match : MANEC (HMM E-Value=0.73)
          Length = 139

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +2

Query: 134 CLQTTC*WYPCD-QLASYLGKTCSGCSC 214
           C+Q  C    CD  + SY G+TC G +C
Sbjct: 87  CVQRCCDVLHCDLAMMSYGGRTCYGVAC 114


>SB_36649| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 221 SHREPR*CVRHLITALRSA 277
           +HR PR  V HL TA+RSA
Sbjct: 44  AHRSPRTIVEHLDTAIRSA 62


>SB_33032| Best HMM Match : Prothymosin (HMM E-Value=0.78)
          Length = 508

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 74  NACCXHPSWGRKC*LPDGDLC 136
           N CC H SW  +C  PD  +C
Sbjct: 406 NPCCAHQSWRAEC--PDEGVC 424


>SB_52403| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +2

Query: 260 TALRSACCTEVCRAHRCYAYXGAFXTRC 343
           + L  A CTE    HRC    G    RC
Sbjct: 18  SCLNGATCTETSYGHRCACVAGFSGNRC 45


>SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
 Frame = -1

Query: 309 HRCARQTSVQH-ADRRAVMR*RT--HQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 139
           H  +R  S  H   R    R  T  H+R     RQHE+      R+++S  H   +H   
Sbjct: 39  HETSRHESSPHETSRHETSRHETSRHERSRHETRQHERSRHKTSRHESS-RHKTSRHGRS 97

Query: 138 RHRS 127
           RH++
Sbjct: 98  RHKT 101


>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1055

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 19/60 (31%), Positives = 23/60 (38%)
 Frame = +2

Query: 164 CDQLASYLGKTCSGCSCCRSHREPR*CVRHLITALRSACCTEVCRAHRCYAYXGAFXTRC 343
           C+  A YLGK+C+    C    EP  C       L    CT+   AH C    G     C
Sbjct: 794 CECSAGYLGKSCNMTDPC----EPSPC-------LNGGSCTKSGLAHSCECTPGYEGANC 842


>SB_6061| Best HMM Match : NACHT (HMM E-Value=0.00065)
          Length = 879

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 254 DDEHISGVLDGYDSTSSQNK 195
           ++EHI+ VLDGYD   S +K
Sbjct: 60  NEEHIAFVLDGYDELPSCSK 79


>SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1276

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 251  HLITALRSACCTEVCRAHRCYAYXGAFXTRC 343
            + + +L  +CC  +CRA  CYA      + C
Sbjct: 1207 YALLSLAMSCCPLLCRAVPCYALLSLAMSCC 1237


>SB_5916| Best HMM Match : R3H (HMM E-Value=2.9e-10)
          Length = 798

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +2

Query: 137 LQTTC*WYPCDQLASYLGKTCSGCS--CCRSHREP 235
           L T C +  C Q  S LG+ C  C+   C SH  P
Sbjct: 704 LDTRCAFESCKQNISLLGQKCVCCTRVFCLSHHIP 738


>SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1267

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 168 SHGYHQHVVCRHRSPSGS*HFLP 100
           +H YH  +   HRSP  S H LP
Sbjct: 317 AHQYHPAISYLHRSPVPSSHLLP 339


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,874,734
Number of Sequences: 59808
Number of extensions: 249442
Number of successful extensions: 630
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)