Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0038
         (360 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical pr...   163   4e-41
U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical pr...    33   0.079
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    32   0.10 
Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical pr...    32   0.10 
U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical pr...    32   0.10 
U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical pr...    32   0.10 
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p...    28   2.3  
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ...    28   2.3  
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha...    28   2.3  
AL110482-8|CAE17990.1|  193|Caenorhabditis elegans Hypothetical ...    27   5.2  
Z98877-12|CAB63409.1|  528|Caenorhabditis elegans Hypothetical p...    26   6.9  
Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical pr...    26   6.9  
Z92826-9|CAD90172.1|  701|Caenorhabditis elegans Hypothetical pr...    26   9.1  
Z92826-5|CAB07318.1|  198|Caenorhabditis elegans Hypothetical pr...    26   9.1  
AL132860-33|CAB60507.2|  701|Caenorhabditis elegans Hypothetical...    26   9.1  

>Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical
           protein B0393.1 protein.
          Length = 276

 Score =  163 bits (395), Expect = 4e-41
 Identities = 74/112 (66%), Positives = 91/112 (81%)
 Frame = +3

Query: 24  MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVL 203
           MSGG    AL EEDV K+LA   HLG+ N+NFQM+ YVYKRR DG ++IN+++TWEKL+L
Sbjct: 1   MSGGAAHSALTEEDVMKLLATQAHLGSTNLNFQMQQYVYKRRFDGPNIINVKKTWEKLLL 60

Query: 204 AARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIXGRXTPGAFTNQI 359
           AARA+ A+ENPADV V+S+RP+ QRA+LKFAAHTGAT I GR +PG  TNQI
Sbjct: 61  AARAIAAVENPADVVVVSARPYAQRALLKFAAHTGATAIFGRFSPGCLTNQI 112


>U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical
           protein C27A2.5 protein.
          Length = 188

 Score = 32.7 bits (71), Expect = 0.079
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +2

Query: 203 GCSCCRSHREPR*CVRHLITALRSACCTEVCRAHR 307
           GC CC    +   C R   T  R+ CCT  C   R
Sbjct: 82  GCGCCCCRPKCCCCCRRCCTCCRTCCCTRCCTCCR 116


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = +2

Query: 203 GCSCCRSHREPR*CVRHLITALRSACCTEVCRAHR 307
           GC CC        C R   T  R+ CCT  C   R
Sbjct: 83  GCGCCCCRPRCCCCCRRCCTCCRTCCCTRCCTCCR 117


>Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical
           protein T01B7.8 protein.
          Length = 164

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = +2

Query: 203 GCSCCRSHREPR*CVRHLITALRSACCTEVCRAHR 307
           GC CC        C R   T  R+ CCT  C   R
Sbjct: 81  GCGCCCCRPRCCCCCRRCCTCCRTCCCTRCCTCCR 115


>U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical
           protein C04G6.10 protein.
          Length = 166

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = +2

Query: 203 GCSCCRSHREPR*CVRHLITALRSACCTEVCRAHR 307
           GC CC        C R   T  R+ CCT  C   R
Sbjct: 82  GCGCCCCRPRCCCCCRRCCTCCRTCCCTRCCTCCR 116


>U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical
           protein C04G6.7 protein.
          Length = 197

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = +2

Query: 203 GCSCCRSHREPR*CVRHLITALRSACCTEVCRAHR 307
           GC CC        C R   T  R+ CCT  C   R
Sbjct: 83  GCGCCCCRPRCCCCCRRCCTCCRTCCCTRCCTCCR 117


>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
           protein T22A3.8 protein.
          Length = 3102

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +2

Query: 80  CCXHPSWG-RKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC-CRSHREPR*CVR 250
           C   P +G R+C           TC   PC++  S    TC G SC C+++ E   C R
Sbjct: 451 CICKPGFGGRRCERCAPGYRNHPTCEPCPCNRAGSVNFDTCDGASCQCKANVEGIYCDR 509


>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
           protein T22A3.8 protein.
          Length = 3102

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +2

Query: 80  CCXHPSWG-RKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC-CRSHREPR*CVR 250
           C   P +G R+C           TC   PC++  S    TC G SC C+++ E   C R
Sbjct: 451 CICKPGFGGRRCERCAPGYRNHPTCEPCPCNRAGSVNFDTCDGASCQCKANVEGIYCDR 509


>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
           chain protein.
          Length = 3102

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +2

Query: 80  CCXHPSWG-RKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC-CRSHREPR*CVR 250
           C   P +G R+C           TC   PC++  S    TC G SC C+++ E   C R
Sbjct: 451 CICKPGFGGRRCERCAPGYRNHPTCEPCPCNRAGSVNFDTCDGASCQCKANVEGIYCDR 509


>AL110482-8|CAE17990.1|  193|Caenorhabditis elegans Hypothetical
           protein Y39G8B.10 protein.
          Length = 193

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +2

Query: 155 WYPCDQLASYLGKTCSGCS 211
           WY C     Y  KTC  CS
Sbjct: 156 WYKCSDRIKYCPKTCGYCS 174



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 143 TTC*WYPCDQLASYLGKTCSGCS 211
           T C +Y C+Q   Y  KTC  C+
Sbjct: 38  TNC-FYTCEQREQYCAKTCEYCA 59


>Z98877-12|CAB63409.1|  528|Caenorhabditis elegans Hypothetical
           protein Y69H2.12 protein.
          Length = 528

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +2

Query: 125 GDLCLQTTC*WYPCDQLASYLGKTCSGCSCC 217
           G  C +T+   Y C  L+ Y G  C   + C
Sbjct: 409 GGTCTETSSGGYTCSCLSQYFGTNCEEINRC 439


>Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical
           protein M02G9.3 protein.
          Length = 294

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +2

Query: 200 SGCSCCRSHREPR*CVRHLITALRSACCTEVCR 298
           S  SCC S      C+   +   +S+C T +C+
Sbjct: 38  SSSSCCSSSSSNSYCIPVCMAQCQSSCTTPICQ 70


>Z92826-9|CAD90172.1|  701|Caenorhabditis elegans Hypothetical
           protein Y56A3A.1a protein.
          Length = 701

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 249 RTHQRGSRWLRQHEQPEQVFPRYD 178
           R H +   W ++HE+P+Q+   Y+
Sbjct: 645 RFHTKYLTWFQRHEEPKQITDDYE 668


>Z92826-5|CAB07318.1|  198|Caenorhabditis elegans Hypothetical
           protein Y56A3A.1b protein.
          Length = 198

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 249 RTHQRGSRWLRQHEQPEQVFPRYD 178
           R H +   W ++HE+P+Q+   Y+
Sbjct: 142 RFHTKYLTWFQRHEEPKQITDDYE 165


>AL132860-33|CAB60507.2|  701|Caenorhabditis elegans Hypothetical
           protein Y56A3A.1a protein.
          Length = 701

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 249 RTHQRGSRWLRQHEQPEQVFPRYD 178
           R H +   W ++HE+P+Q+   Y+
Sbjct: 645 RFHTKYLTWFQRHEEPKQITDDYE 668


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,543,201
Number of Sequences: 27780
Number of extensions: 183597
Number of successful extensions: 413
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)