Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0038
         (360 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   3.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   7.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   7.7  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +3

Query: 15  SATMSGGLDVLALNEEDVTKML 80
           S TMS  L  LALN +DV K L
Sbjct: 310 STTMSNALYELALN-QDVQKKL 330



 Score = 20.6 bits (41), Expect = 5.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 128 LHLEVNIFCPK 96
           L  E+N FCPK
Sbjct: 330 LREEINTFCPK 340


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 210 RAVVAIENPADVFVISSRPFGQRAVLK 290
           RAVVA     DV VI     G  AVL+
Sbjct: 125 RAVVAQAYKVDVEVIGGASRGCTAVLR 151


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 210 RAVVAIENPADVFVISSRPFGQRAVLK 290
           RAVVA     DV VI     G  AVL+
Sbjct: 125 RAVVAQAYKVDVEVIGGASRGCTAVLR 151


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,741
Number of Sequences: 438
Number of extensions: 2009
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)