Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0038
         (360 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   142   8e-35
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   140   3e-34
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   140   3e-34
At2g22340.1 68415.m02651 hypothetical protein                          33   0.075
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein...    28   1.6  
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha...    28   1.6  
At3g16160.1 68416.m02040 tesmin/TSO1-like CXC domain-containing ...    27   3.8  
At2g01660.2 68415.m00093 33 kDa secretory protein-related contai...    27   5.0  
At2g01660.1 68415.m00092 33 kDa secretory protein-related contai...    27   5.0  
At2g31920.1 68415.m03899 expressed protein                             26   6.6  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  142 bits (343), Expect = 8e-35
 Identities = 65/105 (61%), Positives = 79/105 (75%)
 Frame = +3

Query: 45  LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 224
           L+  E DV  M AA  HLG +N N+QME YV+KRR DG ++ NL +TWEKL +AAR +VA
Sbjct: 12  LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71

Query: 225 IENPADVFVISSRPFGQRAVLKFAAHTGATPIXGRXTPGAFTNQI 359
           IENP D+ V S+RP+GQRAVLKFA +TGA  I GR TPG FTNQ+
Sbjct: 72  IENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQM 116


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  140 bits (338), Expect = 3e-34
 Identities = 62/101 (61%), Positives = 78/101 (77%)
 Frame = +3

Query: 57  EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 236
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76

Query: 237 ADVFVISSRPFGQRAVLKFAAHTGATPIXGRXTPGAFTNQI 359
            D+ V S+RP+GQRAVLKFA +TG   I GR TPG FTNQ+
Sbjct: 77  KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQM 117


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  140 bits (338), Expect = 3e-34
 Identities = 62/101 (61%), Positives = 78/101 (77%)
 Frame = +3

Query: 57  EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 236
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76

Query: 237 ADVFVISSRPFGQRAVLKFAAHTGATPIXGRXTPGAFTNQI 359
            D+ V S+RP+GQRAVLKFA +TG   I GR TPG FTNQ+
Sbjct: 77  KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQM 117


>At2g22340.1 68415.m02651 hypothetical protein
          Length = 358

 Score = 32.7 bits (71), Expect = 0.075
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 95  SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 214
           SW     LP+GD  +Q  C WY   +  S +G+  +   C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227


>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
           contains PF01422: NF-X1 type zinc finger
          Length = 912

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 23/78 (29%), Positives = 27/78 (34%)
 Frame = +2

Query: 65  CHQNACCXHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*C 244
           CH   C   P  G++   P G    Q       CD +A   G TC     C  HR P  C
Sbjct: 312 CHAGECGLCPYQGKRS-CPCGKRFYQGLS----CDVVAPLCGGTCDKVLGCGYHRCPERC 366

Query: 245 VRHLITALRSACCTEVCR 298
            R           T+ CR
Sbjct: 367 HRGPCLETCRIVVTKSCR 384


>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
           A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
           from [Arabidopsis thaliana]
          Length = 78

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +2

Query: 161 PCDQLASYLGKTCSGCSCCRSHREPR*CVRHLITALRSACC 283
           P  Q   Y GK  +     + +   R  V HL+ ALR  CC
Sbjct: 38  PVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGGCC 78


>At3g16160.1 68416.m02040 tesmin/TSO1-like CXC domain-containing
           protein low similarity to cysteine-rich polycomb-like
           protein (cpp1) [Glycine max] GI:4218187; contains Pfam
           profile PF03638: Tesmin/TSO1-like CXC domain
          Length = 360

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = +2

Query: 125 GDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*C 244
           G  C Q+ C    CD  AS  G  C+ C C   H     C
Sbjct: 68  GCRCKQSKCLKLYCDCFAS--GVVCTDCDCVDCHNNSEKC 105


>At2g01660.2 68415.m00093 33 kDa secretory protein-related contains
           Pfam PF01657: Domain of unknown function, duplicated in
           33 KDa secretory proteins
          Length = 259

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -2

Query: 206 SQNKFFPGTTQVDHMGTISTSFV-DIGLHLEVNIFCPKMGGXSKHFGDIFLVEGE 45
           SQ K+FPG+    ++ ++ TSFV    L+   N     + G S     ++   G+
Sbjct: 33  SQEKYFPGSPYESNVNSLLTSFVSSASLYTYNNFTTNGISGDSSSVYGLYQCRGD 87


>At2g01660.1 68415.m00092 33 kDa secretory protein-related contains
           Pfam PF01657: Domain of unknown function, duplicated in
           33 KDa secretory proteins
          Length = 288

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -2

Query: 206 SQNKFFPGTTQVDHMGTISTSFV-DIGLHLEVNIFCPKMGGXSKHFGDIFLVEGE 45
           SQ K+FPG+    ++ ++ TSFV    L+   N     + G S     ++   G+
Sbjct: 33  SQEKYFPGSPYESNVNSLLTSFVSSASLYTYNNFTTNGISGDSSSVYGLYQCRGD 87


>At2g31920.1 68415.m03899 expressed protein
          Length = 585

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 144 RRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRP 266
           RR D   +++  R   KLVL  ++++ IE+P+  F   + P
Sbjct: 173 RRRDAALLLSSPRLKSKLVLNDKSLLKIESPSKYFNCGTSP 213


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,054,310
Number of Sequences: 28952
Number of extensions: 165948
Number of successful extensions: 371
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)