Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0036
         (627 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...   212   2e-55
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    29   3.6  

>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score =  212 bits (517), Expect = 2e-55
 Identities = 101/188 (53%), Positives = 136/188 (72%), Gaps = 1/188 (0%)
 Frame = +2

Query: 5   IIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPK 184
           ++K+ G      E  +SQAL++LETN D+++QL+ELYI   KE+EL NK +IIIYVP+P+
Sbjct: 8   LLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVPQ 67

Query: 185 LKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRV-ANKQKRPRSRTLTSVYD 361
           LKAF KI   LVRELEKKF G+ ++ +  R+ILPKP   ++    KQKRPRSRTLT+V+D
Sbjct: 68  LKAFHKIHPALVRELEKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVHD 127

Query: 362 AILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKXDTXQXXYKKLTGXXSDL 541
           A L++LV+PAE+VG+RIRVKLDG ++ KVHLDK+ QT + HK       Y+KLTG     
Sbjct: 128 AWLDELVYPAEVVGRRIRVKLDGKKVYKVHLDKSHQTNVGHKIGVFASVYRKLTGKDVTF 187

Query: 542 XXXPEPLF 565
              P+P+F
Sbjct: 188 -EFPDPIF 194


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 66  SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCR 176
           S+SK T      F SF  Q ++K  YT  S SSS  R
Sbjct: 376 SSSKKTTKEDDFFDSFETQPVQKSRYTASSSSSSTSR 412


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,021,963
Number of Sequences: 27780
Number of extensions: 229807
Number of successful extensions: 636
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)