Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0035
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 365 e-101
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 365 e-101
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 308 4e-84
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 244 4e-79
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 214 5e-56
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 214 5e-56
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 206 2e-53
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 3e-33
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 92 4e-19
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 92 4e-19
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 92 4e-19
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 91 8e-19
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 91 8e-19
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 58 9e-09
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 56 2e-08
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 56 3e-08
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 42 4e-05
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 46 4e-05
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 45 5e-05
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 42 4e-04
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 42 6e-04
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 39 0.004
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 39 0.004
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 37 0.013
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 37 0.018
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 35 0.071
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 35 0.071
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 33 0.29
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 32 0.38
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 31 0.66
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 2.7
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 2.7
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 4.7
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 365 bits (897), Expect = e-101
Identities = 172/195 (88%), Positives = 177/195 (90%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 217
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 218 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGT 397
DKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+V GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 398 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDXTEPPYSEPRFEEIKKEVCSYXKK 577
GEFEAGISKNGQTREHALLA TLGVKQLIV NKMD TEPP+SE RF EI EV + KK
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKK 180
Query: 578 IGYNPAAXAFVPIXG 622
IGYNP A FVPI G
Sbjct: 181 IGYNPKAVPFVPISG 195
Score = 56.4 bits (130), Expect = 2e-08
Identities = 23/32 (71%), Positives = 25/32 (78%)
Frame = +1
Query: 631 GDNMLEPSTKMPWFRGWQVERKEGKADGNALL 726
GDNMLE S+ MPWF+GW VERKEG A G LL
Sbjct: 198 GDNMLEVSSNMPWFKGWAVERKEGNASGKTLL 229
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 365 bits (897), Expect = e-101
Identities = 172/195 (88%), Positives = 177/195 (90%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 217
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 218 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGT 397
DKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+V GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 398 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDXTEPPYSEPRFEEIKKEVCSYXKK 577
GEFEAGISKNGQTREHALLA TLGVKQLIV NKMD TEPP+SE RF EI EV + KK
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKK 180
Query: 578 IGYNPAAXAFVPIXG 622
IGYNP A FVPI G
Sbjct: 181 IGYNPKAVPFVPISG 195
Score = 56.4 bits (130), Expect = 2e-08
Identities = 23/32 (71%), Positives = 25/32 (78%)
Frame = +1
Query: 631 GDNMLEPSTKMPWFRGWQVERKEGKADGNALL 726
GDNMLE S+ MPWF+GW VERKEG A G LL
Sbjct: 198 GDNMLEVSSNMPWFKGWAVERKEGNASGKTLL 229
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 308 bits (755), Expect = 4e-84
Identities = 161/228 (70%), Positives = 172/228 (75%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 217
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 218 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGT 397
DKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+V GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 398 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDXTEPPYSEPRFEEIKKEVCSYXKK 577
GEFEAGISKNGQTREHALLA TLGVKQL V+ T P S R + I++
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQL---VSLRSPTRSPDSSRRSDTIQR-----LFH 172
Query: 578 IGYNPAAXAFVPIXGMARETTCWSLQPKCLGSGDGRWSVRKAKXTEMP 721
+ +P + ETTC C GS DG + RK E P
Sbjct: 173 LSQSPD----------STETTCLRSPRTCHGSRDGLLNARKETLPERP 210
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 244 bits (598), Expect(2) = 4e-79
Identities = 112/116 (96%), Positives = 115/116 (99%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 217
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 218 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 385
DKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+V
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVV 116
Score = 68.9 bits (161), Expect(2) = 4e-79
Identities = 31/48 (64%), Positives = 34/48 (70%)
Frame = +2
Query: 479 LIVGVNKMDXTEPPYSEPRFEEIKKEVCSYXKKIGYNPAAXAFVPIXG 622
L+V NKMD TEPP+SE RF EI EV + KKIGYNP A FVPI G
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISG 161
Score = 56.4 bits (130), Expect = 2e-08
Identities = 23/32 (71%), Positives = 25/32 (78%)
Frame = +1
Query: 631 GDNMLEPSTKMPWFRGWQVERKEGKADGNALL 726
GDNMLE S+ MPWF+GW VERKEG A G LL
Sbjct: 164 GDNMLEVSSNMPWFKGWAVERKEGNASGKTLL 195
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 214 bits (523), Expect = 5e-56
Identities = 104/197 (52%), Positives = 138/197 (70%), Gaps = 1/197 (0%)
Frame = +2
Query: 47 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 226
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 227 KAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTGEF 406
+ ERERG+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEF
Sbjct: 227 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 286
Query: 407 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDXTEPPYSEPRFEEIKKEVCSY-XKKIG 583
E G GQT+EHALL +LGV QLIV VNK+D + +S+ RF+EIK + + ++ G
Sbjct: 287 ETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVFLTRQAG 344
Query: 584 YNPAAXAFVPIXGMARE 634
+ + FVP+ G E
Sbjct: 345 F--SKPKFVPVSGFTGE 359
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 214 bits (523), Expect = 5e-56
Identities = 104/197 (52%), Positives = 138/197 (70%), Gaps = 1/197 (0%)
Frame = +2
Query: 47 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 226
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 227 KAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTGEF 406
+ ERERG+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEF
Sbjct: 245 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 304
Query: 407 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDXTEPPYSEPRFEEIKKEVCSY-XKKIG 583
E G GQT+EHALL +LGV QLIV VNK+D + +S+ RF+EIK + + ++ G
Sbjct: 305 ETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVFLTRQAG 362
Query: 584 YNPAAXAFVPIXGMARE 634
+ + FVP+ G E
Sbjct: 363 F--SKPKFVPVSGFTGE 377
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 206 bits (502), Expect = 2e-53
Identities = 93/196 (47%), Positives = 134/196 (68%), Gaps = 1/196 (0%)
Frame = +2
Query: 41 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 220
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 221 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTG 400
ERE+G T+++ FET K + TI+DAPGH+ F+ NMI G +QAD AVL++ A G
Sbjct: 164 TNDEEREKGKTVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRG 223
Query: 401 EFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDXTEPPYSEPRFEEIKKEVCSYXKKI 580
EFE G + GQTREH++L T GVK L++ VNKMD + E RF+EI+ ++ + +K+
Sbjct: 224 EFETGFDRGGQTREHSMLVKTAGVKHLVILVNKMDDPTVKWEEERFKEIEGKLTPFLRKL 283
Query: 581 GYNPAA-XAFVPIXGM 625
G+NP +VP G+
Sbjct: 284 GFNPKTDITYVPCSGL 299
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 3e-33
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 217
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 218 DKLKAER 238
DKLK +
Sbjct: 61 DKLKVTK 67
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 91.9 bits (218), Expect = 4e-19
Identities = 64/183 (34%), Positives = 94/183 (51%), Gaps = 2/183 (1%)
Frame = +2
Query: 44 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 223
++K H+N+ IGHVD GK+T T + K+E +D
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED---------------IDN 89
Query: 224 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTGE 403
E+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+V A G
Sbjct: 90 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGP 149
Query: 404 FEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDXTEPPYSEPRFEEIKKEVCSYXKK 577
QTREH LLA +GV ++V +NK+D E P +E R E ++ ++ +
Sbjct: 150 MP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNE 199
Query: 578 IGY 586
GY
Sbjct: 200 FGY 202
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 91.9 bits (218), Expect = 4e-19
Identities = 64/183 (34%), Positives = 94/183 (51%), Gaps = 2/183 (1%)
Frame = +2
Query: 44 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 223
++K H+N+ IGHVD GK+T T + K+E +D
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED---------------IDN 90
Query: 224 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTGE 403
E+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+V A G
Sbjct: 91 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGP 150
Query: 404 FEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDXTEPPYSEPRFEEIKKEVCSYXKK 577
QTREH LLA +GV ++V +NK+D E P +E R E ++ ++ +
Sbjct: 151 MP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNE 200
Query: 578 IGY 586
GY
Sbjct: 201 FGY 203
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 91.9 bits (218), Expect = 4e-19
Identities = 64/183 (34%), Positives = 94/183 (51%), Gaps = 2/183 (1%)
Frame = +2
Query: 44 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 223
++K H+N+ IGHVD GK+T T + K+E +D
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED---------------IDN 90
Query: 224 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTGE 403
E+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+V A G
Sbjct: 91 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGP 150
Query: 404 FEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDXTEPPYSEPRFEEIKKEVCSYXKK 577
QTREH LLA +GV ++V +NK+D E P +E R E ++ ++ +
Sbjct: 151 MP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNE 200
Query: 578 IGY 586
GY
Sbjct: 201 FGY 203
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 91.1 bits (216), Expect = 8e-19
Identities = 60/157 (38%), Positives = 85/157 (54%), Gaps = 2/157 (1%)
Frame = +2
Query: 50 KTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 223
K ++N+ IGH+D GK+T T + + G K KF++ +DK
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE---------------IDK 85
Query: 224 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTGE 403
K E++RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++ A G
Sbjct: 86 GKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGV 145
Query: 404 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDXTE 514
E QT+EH +LA +GVK + + +NK D E
Sbjct: 146 ME-------QTKEHLILAKQVGVKNMAIFINKADLVE 175
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 91.1 bits (216), Expect = 8e-19
Identities = 60/157 (38%), Positives = 85/157 (54%), Gaps = 2/157 (1%)
Frame = +2
Query: 50 KTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 223
K ++N+ IGH+D GK+T T + + G K KF++ +DK
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE---------------IDK 85
Query: 224 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTGE 403
K E++RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++ A G
Sbjct: 86 GKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGV 145
Query: 404 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDXTE 514
E QT+EH +LA +GVK + + +NK D E
Sbjct: 146 ME-------QTKEHLILAKQVGVKNMAIFINKADLVE 175
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 57.6 bits (133), Expect = 9e-09
Identities = 46/148 (31%), Positives = 66/148 (44%)
Frame = +2
Query: 62 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 241
N ++ HVD GKST L+ CG + +K+ +LDKL+ ERE
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPG-----QKQ-------------MLDKLQVERE 85
Query: 242 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTGEFEAGIS 421
RGIT+ Y + +ID PGH DF + + D +L+V A G
Sbjct: 86 RGITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG------- 138
Query: 422 KNGQTREHALLAFTLGVKQLIVGVNKMD 505
QT + LAF + Q+I +NK+D
Sbjct: 139 VQAQTIANFWLAFEKNI-QIIPVINKID 165
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 56.4 bits (130), Expect = 2e-08
Identities = 39/113 (34%), Positives = 53/113 (46%)
Frame = +2
Query: 62 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 241
NI VI HVD+GK+T T L+Y G I A + KG+ V D L ERE
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAIHV---------AGHVDKGNT----VTDFLDIERE 73
Query: 242 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTG 400
RGIT+ A + + + +ID PGH DF + D V+++ G
Sbjct: 74 RGITVQSAAVNLDWKGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGSAG 126
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 56.0 bits (129), Expect = 3e-08
Identities = 47/148 (31%), Positives = 65/148 (43%)
Frame = +2
Query: 62 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 241
NI + H+DSGK+T T ++Y G ID E+ +G +D + ER+
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRIDSM---------HEV-RGKDDVGATMDFMDLERQ 95
Query: 242 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTGEFEAGIS 421
RGITI A + + IID PGH DF + D AVL++ G G G+
Sbjct: 96 RGITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG----GVQ 150
Query: 422 KNGQTREHALLAFTLGVKQLIVGVNKMD 505
T L + + I VNKMD
Sbjct: 151 SQTFTVNRQLARYNV---PFICFVNKMD 175
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 41.9 bits (94), Expect(2) = 4e-05
Identities = 37/108 (34%), Positives = 47/108 (43%), Gaps = 1/108 (0%)
Frame = +2
Query: 185 GKGSFKYAWVLDKLKAERERGITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQ 361
GK + A ++ A GIT I + E +K VT +D PGH F G
Sbjct: 168 GKTTLLDAMRNSQIAAGEFGGITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKG 227
Query: 362 ADCAVLIVXAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 505
AD VL+V A G E QT + A V QL+V VNK+D
Sbjct: 228 ADIVVLVVAADDGVKE-------QTAQSIKFAKDANV-QLVVAVNKID 267
Score = 23.0 bits (47), Expect(2) = 4e-05
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +2
Query: 65 IVVIGHVDSGKST 103
+ ++GHVD GK+T
Sbjct: 159 VTIMGHVDHGKTT 171
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 45.6 bits (103), Expect = 4e-05
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 13/134 (9%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQE----MGK 190
M +++ N+ VI HVD GKST T L+ K G I K +F K+ QE +
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKS 72
Query: 191 GSFKYAWVLDKLKAERERG----ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 358
+ + L+K E +G T+++ K + + + + +ID+PGH DF +
Sbjct: 73 TAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALG 132
Query: 359 QADCAVLIVXAGTG 400
D A+++V +G
Sbjct: 133 VTDGALVVVDCVSG 146
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 45.2 bits (102), Expect = 5e-05
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 13/134 (9%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQE----MGK 190
M +++ N+ VI HVD GKST T L+ K G I K +F K+ QE +
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKS 72
Query: 191 GSFKYAWVLDKLKAERERG----ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 358
+ + L+K E +G T+++ K + + + + +ID+PGH DF +
Sbjct: 73 TAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALR 132
Query: 359 QADCAVLIVXAGTG 400
D A+++V +G
Sbjct: 133 VTDGALVVVDCVSG 146
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 42.3 bits (95), Expect = 4e-04
Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 1/166 (0%)
Frame = +2
Query: 59 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 238
+N+ ++GHVDSGK+T T + E+G S A
Sbjct: 14 LNLGILGHVDSGKTTLT-------------------RRIAELGSTSAFDAHATSTTTDGI 54
Query: 239 ERGITIDIALWKFET-SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTGEFEAG 415
R T+D+ + S + +ID PGH I+ ++ ++ D A++I+ + AG
Sbjct: 55 RRN-TLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAG 108
Query: 416 ISKNGQTREHALLAFTLGVKQLIVGVNKMDXTEPPYSEPRFEEIKK 553
I QT EH LLA ++I+ +NK D E ++++K
Sbjct: 109 IQP--QTAEHLLLASKFCPNRVIIVLNKCDLAEKSKISESAKKVRK 152
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 41.5 bits (93), Expect = 6e-04
Identities = 55/198 (27%), Positives = 82/198 (41%), Gaps = 11/198 (5%)
Frame = +2
Query: 14 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKC---GGIDKRTIEKFEKEAQEM 184
++IRD P K+ + V+G+VD+GKST G L + G RT K E
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTHSALDDGRGAARTKLFRHKHEFES 185
Query: 185 GKGSFKYAWVL------DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMI 346
G+ S +L + + +D + +K VT ID GH ++K I
Sbjct: 186 GRTSSVGNDILGFDVHGNIVNKPDPHNHNLDWVQIGSDCAK-LVTFIDLAGHEKYLKTTI 244
Query: 347 TGTS--QADCAVLIVXAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDXTEPP 520
G + D +L++ A G G T+EH LA +L V +V V K+D
Sbjct: 245 FGMTGHMPDYTMLMIGANMGII-------GTTKEHLSLALSLHVPVYLV-VTKIDMCPAN 296
Query: 521 YSEPRFEEIKKEVCSYXK 574
E + I + V S K
Sbjct: 297 ILEETMKNITRLVRSAKK 314
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 38.7 bits (86), Expect = 0.004
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Frame = +2
Query: 44 KEKTHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 220
K HI N+ ++ HVD GK++ L+ I R G +Y +D
Sbjct: 15 KPAEHIRNVCLVAHVDHGKTSFADSLVSANAVISSRMA------------GKLRY---MD 59
Query: 221 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 385
+ E+ RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 60 SREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 38.7 bits (86), Expect = 0.004
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Frame = +2
Query: 44 KEKTHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 220
K HI N+ ++ HVD GK++ L+ I R G +Y +D
Sbjct: 15 KPAEHIRNVCLVAHVDHGKTSFADSLVSANAVISSRMA------------GKLRY---MD 59
Query: 221 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 385
+ E+ RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 60 SREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 37.1 bits (82), Expect = 0.013
Identities = 54/199 (27%), Positives = 82/199 (41%), Gaps = 12/199 (6%)
Frame = +2
Query: 14 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKC---GGIDKRTIEKFEKEAQEM 184
++IRD P K+ + V+G+VD+GKST G L + G RT K E
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTHSALDDGRGAARTKLFRHKHEFES 185
Query: 185 GKGSFKYAWVL------DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMI 346
G+ S +L + + +D + +K VT ID GH ++K I
Sbjct: 186 GRTSSVGNDILGFDVHGNIVNKPDPHNHNLDWVQIGSDCAK-LVTFIDLAGHEIYLKTTI 244
Query: 347 TGTSQ---ADCAVLIVXAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDXTEP 517
G + + +L++ A G G T+EH LA +L V +V V K+D
Sbjct: 245 FGMHRPYARNYTMLMIGANMGII-------GTTKEHLSLALSLHVPVYLV-VTKIDMCPA 296
Query: 518 PYSEPRFEEIKKEVCSYXK 574
E + I + V S K
Sbjct: 297 YILEETMKNITRLVRSAKK 315
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 36.7 bits (81), Expect = 0.018
Identities = 23/85 (27%), Positives = 39/85 (45%)
Frame = +2
Query: 293 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTGEFEAGISKNGQTREHALLAFTLGV 472
+V+ +D PGH + M+ G + D A L+V AG QT EH + +
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLV-AGNEP-----CPQPQTSEHLAAVEIMQL 181
Query: 473 KQLIVGVNKMDXTEPPYSEPRFEEI 547
L++ NK+D + + +E+I
Sbjct: 182 NHLMILQNKVDIIKESQARENYEQI 206
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 34.7 bits (76), Expect = 0.071
Identities = 28/113 (24%), Positives = 47/113 (41%)
Frame = +2
Query: 62 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 241
N+ + GH+ GK+T L+ ++T +F + E F ++K +
Sbjct: 134 NVAIAGHLHHGKTTFLDCLM-------EQTHPEFYRA--EDADARFTDILFIEKQRGCSI 184
Query: 242 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTG 400
+ + I + Y + IID PGH +F M AD V++V A G
Sbjct: 185 KSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 34.7 bits (76), Expect = 0.071
Identities = 28/113 (24%), Positives = 47/113 (41%)
Frame = +2
Query: 62 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 241
N+ + GH+ GK+T L+ ++T +F + E F ++K +
Sbjct: 9 NVAIAGHLHHGKTTFLDCLM-------EQTHPEFYRA--EDADARFTDILFIEKQRGCSI 59
Query: 242 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXAGTG 400
+ + I + Y + IID PGH +F M AD V++V A G
Sbjct: 60 KSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 32.7 bits (71), Expect = 0.29
Identities = 53/199 (26%), Positives = 84/199 (42%), Gaps = 8/199 (4%)
Frame = +2
Query: 11 QFVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKC--GGIDKRTIEKFEKEAQEM 184
+ ++R P+ ++ + + V+G D GKST G L C G K I F + E+
Sbjct: 154 EVLVRKVPE-SQQFIEVRLAVVGGCDVGKSTLCGVLTQGCLDDGNGKARIGIF-RFPHEV 211
Query: 185 GKGSFKYAWVLDKLKAERERGITIDIALWKF----ETSKYYVTIIDAPGHRDFIKNMITG 352
G K + V + + RG ++ A E S VT+ID G + K I G
Sbjct: 212 RTG--KTSSVCNDVIGFDNRGKLVNYAQNSLEEMVEKSSKLVTLIDLAGDAKYQKTTIHG 269
Query: 353 TS--QADCAVLIVXAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDXTEPPYS 526
+ A L+V A + GI+ TREH L L + ++ + KMD +
Sbjct: 270 LTGYTPHFACLVVAA-----DRGIT--WATREHLGLIAALNIPMFVL-ITKMDLVD---- 317
Query: 527 EPRFEEIKKEVCSYXKKIG 583
++I K+V + K G
Sbjct: 318 RQGLKKIIKDVSNLVAKAG 336
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 32.3 bits (70), Expect = 0.38
Identities = 25/78 (32%), Positives = 35/78 (44%)
Frame = +2
Query: 302 IIDAPGHRDFIKNMITGTSQADCAVLIVXAGTGEFEAGISKNGQTREHALLAFTLGVKQL 481
IID PGH F G+S D A+L+V + G+ QT E +L G
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV-----DIMHGLEP--QTIE-SLKLLIKGKTPF 604
Query: 482 IVGVNKMDXTEPPYSEPR 535
++ +NK+D S PR
Sbjct: 605 VIALNKIDRLYEYESNPR 622
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 31.5 bits (68), Expect = 0.66
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -1
Query: 498 LFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAXTMSTA 370
LF PT+SC+ + AS S P + PA N VP T+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 140 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 241
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 140 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 241
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 59 INIVVIGHVDSGKSTTT 109
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,551,549
Number of Sequences: 27780
Number of extensions: 343078
Number of successful extensions: 919
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -