Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0034
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    92   7e-20
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...    39   7e-04
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    25   8.7  

>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 92.3 bits (219), Expect = 7e-20
 Identities = 49/95 (51%), Positives = 57/95 (60%)
 Frame = +2

Query: 275 VRTIAMDGTECLVRGQPVLYSGSPIXXPXXAXTLXXIINVXGXPIDXRGPIPTDKTAAIH 454
           VRTIAMDGTE LVRG  V+ +GSPI  P    TL  I+NV G P+D RGPI   K + IH
Sbjct: 105 VRTIAMDGTEGLVRGTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIH 164

Query: 455 AESPXVVDXXAQHETXVXVIKVXDXLXPYAXGGXI 559
           A++P   +     E     IKV D L PYA GG I
Sbjct: 165 ADAPSFEEQSTTPEILETGIKVVDLLAPYARGGKI 199



 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 35/61 (57%), Positives = 42/61 (68%), Gaps = 4/61 (6%)
 Frame = +1

Query: 103 YAAKSAGK-GQGKVVAVIGAXVDVQFE--DNLPPILNALEVQ-NRSPRLVLEVTQHLGXN 270
           YA+  A K  +G +  VIGA VD QFE  D+LP ILNALEV+   + RLVLEV QH+G N
Sbjct: 44  YASTEAAKHNKGSIKQVIGAVVDCQFEDADSLPSILNALEVKLPDNKRLVLEVAQHVGEN 103

Query: 271 T 273
           T
Sbjct: 104 T 104



 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 24/40 (60%), Positives = 27/40 (67%)
 Frame = +1

Query: 586 GKTXLIMELINNVCQAHGXYSGIAGXGERPPDRNDLYXEM 705
           GKT  I ELINN+ +AHG YS   G GER  + NDLY EM
Sbjct: 208 GKTVFIQELINNIAKAHGGYSVFTGVGERTREGNDLYREM 247


>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 39.1 bits (87), Expect = 7e-04
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
 Frame = +2

Query: 296 GTECLVR-GQPVLYSGSPIXXPXXAXTLXXIINVXGXPIDXRGPIPTDKTAAIHAESPXV 472
           G + LVR G+ V  +   +  P     L  +++  G PID +GPI T +   +  ++P +
Sbjct: 105 GNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGPIKTTERRRVQLKAPGI 164

Query: 473 VDXXAQHETXVXVIKVXDXLXPYAXG 550
           +   +  E     +K  D + P   G
Sbjct: 165 LPRTSVCEPMQTGLKAIDSMVPIGRG 190


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 325 GLPTD*AFSTVHGNGPNMCXHPNVGLPQVRGGEIDFAP 212
           G+  + A  T+H N P +  HP +   +++G E   +P
Sbjct: 80  GVSLNAASPTIHSNTPTVVSHPVMSGSELKGEESHNSP 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,249,728
Number of Sequences: 5004
Number of extensions: 35086
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)