Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0034
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase su...   103   1e-22
AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical ...    45   5e-05
AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical ...    45   5e-05
AL023815-3|CAD92384.1|  503|Caenorhabditis elegans Hypothetical ...    38   0.010

>U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase
           subunit protein 2 protein.
          Length = 538

 Score =  103 bits (247), Expect = 1e-22
 Identities = 54/95 (56%), Positives = 60/95 (63%)
 Frame = +2

Query: 275 VRTIAMDGTECLVRGQPVLYSGSPIXXPXXAXTLXXIINVXGXPIDXRGPIPTDKTAAIH 454
           VR IAMDGTE LVRGQPV  +G PI  P    TL  I+NV G PID RGPI +   AAIH
Sbjct: 117 VRCIAMDGTEGLVRGQPVADTGDPIKIPVGPETLGRIMNVIGEPIDERGPIASKNFAAIH 176

Query: 455 AESPXVVDXXAQHETXVXVIKVXDXLXPYAXGGXI 559
           AE+P  V+   + E  V  IKV D L PYA GG I
Sbjct: 177 AEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKI 211



 Score = 81.0 bits (191), Expect = 8e-16
 Identities = 37/55 (67%), Positives = 44/55 (80%)
 Frame = +1

Query: 106 AAKSAGKGQGKVVAVIGAXVDVQFEDNLPPILNALEVQNRSPRLVLEVTQHLGXN 270
           A  +A    G++VAVIGA VDVQF++NLPPILN LEV  RSPRL+LEV+QHLG N
Sbjct: 61  AKATAANASGRIVAVIGAVVDVQFDENLPPILNGLEVVGRSPRLILEVSQHLGDN 115



 Score = 60.9 bits (141), Expect = 9e-10
 Identities = 29/41 (70%), Positives = 31/41 (75%)
 Frame = +1

Query: 586 GKTXLIMELINNVCQAHGXYSGIAGXGERPPDRNDLYXEMI 708
           GKT LIMELINNV +AHG YS  AG GER  + NDLY EMI
Sbjct: 220 GKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMI 260


>AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical
           protein H28O16.1d protein.
          Length = 511

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
 Frame = +2

Query: 284 IAMDGTECLVR-GQPVLYSGSPIXXPXXAXTLXXIINVXGXPIDXRGPIPTDKTAAIHAE 460
           + + G + ++R G  V  +G+ +  P     L  +++  G PID +GPI   + + +  +
Sbjct: 74  VVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPIANARRSRVEVK 133

Query: 461 SPXVVDXXAQHETXVXVIKVXDXLXPYAXG 550
           +P ++   +  E  V  +K  D L P   G
Sbjct: 134 APGIIPRLSVREPMVTGVKAVDSLVPIGRG 163


>AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical
           protein H28O16.1a protein.
          Length = 538

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
 Frame = +2

Query: 284 IAMDGTECLVR-GQPVLYSGSPIXXPXXAXTLXXIINVXGXPIDXRGPIPTDKTAAIHAE 460
           + + G + ++R G  V  +G+ +  P     L  +++  G PID +GPI   + + +  +
Sbjct: 101 VVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPIANARRSRVEVK 160

Query: 461 SPXVVDXXAQHETXVXVIKVXDXLXPYAXG 550
           +P ++   +  E  V  +K  D L P   G
Sbjct: 161 APGIIPRLSVREPMVTGVKAVDSLVPIGRG 190


>AL023815-3|CAD92384.1|  503|Caenorhabditis elegans Hypothetical
           protein H28O16.1c protein.
          Length = 503

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 392 VXGXPIDXRGPIPTDKTAAIHAESPXVVDXXAQHETXVXVIKVXDXLXPYAXG 550
           V G PID +GPI   + + +  ++P ++   +  E  V  +K  D L P   G
Sbjct: 103 VLGNPIDGKGPIANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVPIGRG 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,815,107
Number of Sequences: 27780
Number of extensions: 217209
Number of successful extensions: 370
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)