Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0034
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 93 2e-19
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 93 2e-19
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 93 2e-19
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 44 1e-04
At1g21480.2 68414.m02686 exostosin family protein contains Pfam ... 31 1.1
At1g21480.1 68414.m02685 exostosin family protein contains Pfam ... 31 1.1
At1g50500.1 68414.m05664 membrane trafficking VPS53 family prote... 29 2.5
At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN ... 29 3.3
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 93.1 bits (221), Expect = 2e-19
Identities = 49/95 (51%), Positives = 57/95 (60%)
Frame = +2
Query: 275 VRTIAMDGTECLVRGQPVLYSGSPIXXPXXAXTLXXIINVXGXPIDXRGPIPTDKTAAIH 454
VRTIAMDGTE LVRG+ VL +G+PI P TL I+NV G PID RG I T+ IH
Sbjct: 133 VRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIH 192
Query: 455 AESPXVVDXXAQHETXVXVIKVXDXLXPYAXGGXI 559
++P +VD E IKV D L PY GG I
Sbjct: 193 RDAPALVDLATGQEILATGIKVVDLLAPYQRGGKI 227
Score = 61.7 bits (143), Expect = 5e-10
Identities = 33/53 (62%), Positives = 39/53 (73%), Gaps = 3/53 (5%)
Frame = +1
Query: 121 GKGQ-GKVVAVIGAXVDVQFEDN--LPPILNALEVQNRSPRLVLEVTQHLGXN 270
GKG G+V VIGA VDV+FED LPPI+ +LEVQ+ RLVLEV+ HLG N
Sbjct: 79 GKGAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQN 131
Score = 59.3 bits (137), Expect = 3e-09
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +1
Query: 586 GKTXLIMELINNVCQAHGXYSGIAGXGERPPDRNDLYXEMI 708
GKT LIMELINNV +AHG +S AG GER + NDLY EMI
Sbjct: 236 GKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMI 276
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 93.1 bits (221), Expect = 2e-19
Identities = 49/95 (51%), Positives = 57/95 (60%)
Frame = +2
Query: 275 VRTIAMDGTECLVRGQPVLYSGSPIXXPXXAXTLXXIINVXGXPIDXRGPIPTDKTAAIH 454
VRTIAMDGTE LVRG+ VL +G+PI P TL I+NV G PID RG I T+ IH
Sbjct: 136 VRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIH 195
Query: 455 AESPXVVDXXAQHETXVXVIKVXDXLXPYAXGGXI 559
++P +VD E IKV D L PY GG I
Sbjct: 196 RDAPALVDLATGQEILATGIKVVDLLAPYQRGGKI 230
Score = 61.7 bits (143), Expect = 5e-10
Identities = 33/53 (62%), Positives = 39/53 (73%), Gaps = 3/53 (5%)
Frame = +1
Query: 121 GKGQ-GKVVAVIGAXVDVQFEDN--LPPILNALEVQNRSPRLVLEVTQHLGXN 270
GKG G+V VIGA VDV+FED LPPI+ +LEVQ+ RLVLEV+ HLG N
Sbjct: 82 GKGAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQN 134
Score = 59.3 bits (137), Expect = 3e-09
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +1
Query: 586 GKTXLIMELINNVCQAHGXYSGIAGXGERPPDRNDLYXEMI 708
GKT LIMELINNV +AHG +S AG GER + NDLY EMI
Sbjct: 239 GKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMI 279
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 93.1 bits (221), Expect = 2e-19
Identities = 49/95 (51%), Positives = 57/95 (60%)
Frame = +2
Query: 275 VRTIAMDGTECLVRGQPVLYSGSPIXXPXXAXTLXXIINVXGXPIDXRGPIPTDKTAAIH 454
VRTIAMDGTE LVRG+ VL +G+PI P TL I+NV G PID RG I T+ IH
Sbjct: 133 VRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIH 192
Query: 455 AESPXVVDXXAQHETXVXVIKVXDXLXPYAXGGXI 559
++P +VD E IKV D L PY GG I
Sbjct: 193 RDAPALVDLATGQEILATGIKVVDLLAPYQRGGKI 227
Score = 61.7 bits (143), Expect = 5e-10
Identities = 33/53 (62%), Positives = 39/53 (73%), Gaps = 3/53 (5%)
Frame = +1
Query: 121 GKGQ-GKVVAVIGAXVDVQFEDN--LPPILNALEVQNRSPRLVLEVTQHLGXN 270
GKG G+V VIGA VDV+FED LPPI+ +LEVQ+ RLVLEV+ HLG N
Sbjct: 79 GKGAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQN 131
Score = 59.3 bits (137), Expect = 3e-09
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +1
Query: 586 GKTXLIMELINNVCQAHGXYSGIAGXGERPPDRNDLYXEMI 708
GKT LIMELINNV +AHG +S AG GER + NDLY EMI
Sbjct: 236 GKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMI 276
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/93 (22%), Positives = 40/93 (43%)
Frame = +2
Query: 272 HVRTIAMDGTECLVRGQPVLYSGSPIXXPXXAXTLXXIINVXGXPIDXRGPIPTDKTAAI 451
+V + G + G V +GS + P L +++ G PID +G + + +
Sbjct: 342 NVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGKGALSDHEQRRV 401
Query: 452 HAESPXVVDXXAQHETXVXVIKVXDXLXPYAXG 550
++P +++ + HE +K D L P G
Sbjct: 402 EVKAPGILERKSVHEPMQTGLKAVDSLVPIGRG 434
>At1g21480.2 68414.m02686 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 410
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 55 QNVEKSLQSMPLTSRDYAAKSAGKGQGKVVAVIGAXVDVQFEDNL 189
+N + +Q +PL+ R Y A G+ QGK + + QF D L
Sbjct: 250 KNGQPDVQPLPLSKRKYLANYLGRAQGKAGRLKLIDLSKQFPDKL 294
>At1g21480.1 68414.m02685 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 462
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 55 QNVEKSLQSMPLTSRDYAAKSAGKGQGKVVAVIGAXVDVQFEDNL 189
+N + +Q +PL+ R Y A G+ QGK + + QF D L
Sbjct: 250 KNGQPDVQPLPLSKRKYLANYLGRAQGKAGRLKLIDLSKQFPDKL 294
>At1g50500.1 68414.m05664 membrane trafficking VPS53 family protein
contains Pfam domain PF04100: Vps53-like, N-terminal
Length = 798
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +2
Query: 47 IPFRMWKNRCSQCR*QVGTMLLNLQEKAKXRLLPLSV 157
+P+R+ C Q R QV ++L+N++EK +L L++
Sbjct: 271 VPYRLCIQFCKQTRKQVESILVNMKEKPVVAILLLAL 307
>At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN
protein (ETT) identical to ETTIN GB:AF007788 from
[Arabidopsis thaliana]
Length = 608
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 271 CXHPNVGLPQVRGGEIDFAPQGHLESEAGY-LRIAHLPQH 155
C P + LP+ RG + + PQGHLE + I LP H
Sbjct: 59 CAGPLISLPK-RGSLVLYFPQGHLEQAPDFSAAIYGLPPH 97
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,268,911
Number of Sequences: 28952
Number of extensions: 201120
Number of successful extensions: 442
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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