Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0032
         (550 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58070.1 68418.m07267 lipocalin, putative similar to temperat...    54   8e-08
At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor, pu...    29   1.5  
At5g36740.1 68418.m04402 PHD finger family protein                     28   3.6  
At5g36670.1 68418.m04388 PHD finger family protein                     28   3.6  
At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative...    28   3.6  
At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) simil...    27   8.3  

>At5g58070.1 68418.m07267 lipocalin, putative similar to temperature
           stress-induced lipocalin [Triticum aestivum] GI:18650668
          Length = 186

 Score = 53.6 bits (123), Expect = 8e-08
 Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
 Frame = +2

Query: 56  ELKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKLEGD-VVKVKNVHIIDGVKK 229
           E++ V   N+  Y G WYEI+ FP+  + KNG  + A Y L  D  + V N    +G + 
Sbjct: 6   EMEVVKGLNVERYMGRWYEIASFPSRFQPKNGVDTRATYTLNPDGTIHVLNETWSNGKRG 65

Query: 230 YIEGTAKLTDDANKAAKLTVTF 295
           +IEG+A   D  +  AKL V F
Sbjct: 66  FIEGSAYKADPKSDEAKLKVKF 87


>At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor,
           putative (AVDE1) similar to EST gb|N37612
          Length = 462

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 68  VNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNV 205
           V NFN++ + G WY I+   N +     C   E+  EGD   V N+
Sbjct: 204 VQNFNISDFNGKWY-ITSGLNPTFDAFDCQLHEFHTEGDNKLVGNI 248


>At5g36740.1 68418.m04402 PHD finger family protein
          Length = 1179

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 152  CSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTD 259
            C    Y  EGD  +  N+ ++DG  +  E T KLTD
Sbjct: 1020 CLKLTYVEEGDNDRESNLKLLDGSVEEKEDTKKLTD 1055


>At5g36670.1 68418.m04388 PHD finger family protein
          Length = 1193

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 152  CSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTD 259
            C    Y  EGD  +  N+ ++DG  +  E T KLTD
Sbjct: 1034 CLKLTYVEEGDNDRESNLKLLDGSVEEKEDTKKLTD 1069


>At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative
           strong similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana
          Length = 345

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
 Frame = +2

Query: 113 ISKFPNESEKNGKCSSAEYKLEG--DVVKVKNVHI 211
           +S FP ES+ + K ++ E+KL G  + V VKN+++
Sbjct: 14  VSGFPKESDFDFKTTTVEFKLPGGSNSVLVKNLYL 48


>At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) similar
           to COP1-interacting protein 4 (CIP4) [Arabidopsis
           thaliana] GI:13160646; supporting cDNA
           gi|13160645|dbj|AB036832.1|;
          Length = 876

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 137 EKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTDDANKAAKLT 286
           EK+GK SS   K +  +  V+   ++D +++  E    L     K++K T
Sbjct: 515 EKSGKKSSKRSKKKDSLNIVEEAQVVDSLQQKKEAEENLEKSGKKSSKKT 564


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,071,866
Number of Sequences: 28952
Number of extensions: 153772
Number of successful extensions: 394
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)