Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0031
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0199 - 23165776-23166259,23166356-23167128,23167633-231678...    29   4.3  
04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202     29   4.3  
12_02_0592 + 20868884-20868954,20869091-20869216,20869554-208698...    28   7.5  
10_08_0914 + 21535519-21535797,21535961-21536339,21536425-215365...    28   7.5  
12_01_0673 - 5745956-5750346,5750788-5750872,5751018-5751082,575...    28   9.9  
04_04_0991 - 29969162-29969912,29970097-29970368                       28   9.9  
03_06_0501 - 34380155-34380637,34380961-34381029,34382206-343822...    28   9.9  

>05_05_0199 -
           23165776-23166259,23166356-23167128,23167633-23167869,
           23167973-23168197
          Length = 572

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +3

Query: 33  ASGELSILHS-PESLSFSGSSKTFESLLKEIFSASLGLSVEENSEWNGLLITDPFNTPEA 209
           A G L +++S P SLS + S  +F SLL    S   G S+         L+T P + P +
Sbjct: 4   APGSLPLVNSRPVSLSLAASRSSFSSLL----SGGAGSSLN--------LMTPPSSLPPS 51

Query: 210 VVEVYISGISSLG 248
               Y  G+SS G
Sbjct: 52  SPSSYFGGVSSSG 64


>04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202
          Length = 711

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +3

Query: 258 DFKSKKYPLVVDEYEPDTFDVLKHRINQRFTNG 356
           DF    YP+   EY P  FDV  H   +RF NG
Sbjct: 311 DFGGDMYPVEDYEYAPADFDVRAHHERERF-NG 342


>12_02_0592 +
           20868884-20868954,20869091-20869216,20869554-20869862,
           20870017-20870300,20870410-20871305,20871586-20871642,
           20872293-20872340,20873046-20873114
          Length = 619

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 22/88 (25%), Positives = 40/88 (45%)
 Frame = +3

Query: 168 NGLLITDPFNTPEAVVEVYISGISSLGSSADFKSKKYPLVVDEYEPDTFDVLKHRINQRF 347
           N +L   PF TP+ +    ++ + + G SAD      PL  D+ +P  +    ++  QR 
Sbjct: 255 NFILGAMPFGTPQDLNYANVTSVRTTGFSAD------PLPTDQKQP-AWKPYLYKGRQRT 307

Query: 348 TNGGNKLVNINLSDSDQLLSYSNVLGDL 431
                + +N  L D D +  + +V G +
Sbjct: 308 LFSSLETLNAALYDRDDVQDFLSVSGQV 335


>10_08_0914 +
           21535519-21535797,21535961-21536339,21536425-21536568,
           21536681-21536730,21536820-21536877,21536979-21537208
          Length = 379

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = +3

Query: 9   ISSIIGINASGELSILHSPESLSFSGSSKTFESLLKEIFSASLGLSVEENSEWN 170
           I S +G+ +SG+L  L +  + +  G++   + + +E+ S +  L  E+   W+
Sbjct: 198 IQSAVGVRSSGDLMTLTAAAATALRGAATMKQRVQREMRSNASVLPYEKGHSWS 251


>12_01_0673 -
           5745956-5750346,5750788-5750872,5751018-5751082,
           5751816-5751993
          Length = 1572

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 426 DLDIPKVKKQSLQHLKSSVEEDFQFLS 506
           D+DI KV K S QHL + ++  F+F S
Sbjct: 551 DIDIMKVLKLSYQHLPTELQICFRFCS 577


>04_04_0991 - 29969162-29969912,29970097-29970368
          Length = 340

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +3

Query: 399 LLSYSNVLGDLDIPKVKKQSLQHLKSSVEEDFQFLSELAALKAVTEKVESGAISADNIID 578
           LLS    LG LD    + Q LQHL +S+      ++  A L A      +  +++ + + 
Sbjct: 164 LLSAVASLGSLDTALRQFQLLQHLLNSITSSSSDVAATAGLMATNLAATNTMVNSSSNVA 223

Query: 579 FYNLRINSL-HA 611
            +  ++N+L HA
Sbjct: 224 SFQEQMNALAHA 235


>03_06_0501 -
           34380155-34380637,34380961-34381029,34382206-34382229,
           34382622-34382786
          Length = 246

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +3

Query: 450 KQSLQHLKSSVEEDFQFLSELAALKAVTEKVESGAISADNIIDFYNLRINSLHAL 614
           K  L HL+S  EED Q L+E   L      +E+ A+ A N+   +   +  +H +
Sbjct: 157 KSDLNHLRSVPEEDGQALAEKEGLSF----LETSALEALNVEKAFQTILKDIHQI 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,849,965
Number of Sequences: 37544
Number of extensions: 326778
Number of successful extensions: 874
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)