Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0031
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.5  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   3.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   5.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 187 IRSTLLKQLSKFTLVAYPVWGVPL 258
           +RS  + +LS   LV +PVW V L
Sbjct: 889 LRSLEILRLSGNRLVTFPVWQVTL 912


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 723 LTHHMFYQTPLLILQVLHPVXF 658
           + HH FY  PL     LH + F
Sbjct: 348 IQHHFFYPDPLASKYELHGLKF 369


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 760 GWTMSVVTAVTNTDPSY 710
           GW      A+T+T PSY
Sbjct: 67  GWFNDSAAAITSTSPSY 83


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 264 KSKKYPLVVDEYEPDTF 314
           ++K YPL VD++   TF
Sbjct: 66  RTKNYPLDVDQWHNKTF 82


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 117 LLKDSRKFYWNQRNLTTQD 61
           LLKD  K +W +R L   D
Sbjct: 179 LLKDPVKEFWERRTLQISD 197


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 117 LLKDSRKFYWNQRNLTTQD 61
           LLKD  K +W +R L   D
Sbjct: 232 LLKDPVKEFWERRTLQISD 250


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +3

Query: 297 YEPDTFDVLKHRINQRFTNGGNKLVNINLSDSDQLLSYSNVL 422
           +E D+F V KH    R +  G    N+  + +   +  S V+
Sbjct: 707 WEGDSFKVSKHEEVSRTSTAGQFPTNVATTVTSMSIDQSTVI 748



 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 247 PRLDMPLM*TSTTASGVLNGSVINNP 170
           P + +P+   STT +GV+   VI  P
Sbjct: 827 PYMFLPVSYMSTTMAGVIYPPVIGTP 852


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,435
Number of Sequences: 438
Number of extensions: 3739
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)