Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0030
         (800 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6XM74 Cluster: FirrV-1-A13; n=1; Feldmannia irregulari...    34   3.6  
UniRef50_Q5A4E5 Cluster: DNA polymerase; n=1; Candida albicans|R...    34   3.6  

>UniRef50_Q6XM74 Cluster: FirrV-1-A13; n=1; Feldmannia irregularis
           virus a|Rep: FirrV-1-A13 - Feldmannia irregularis virus
           a
          Length = 163

 Score = 34.3 bits (75), Expect = 3.6
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +1

Query: 265 RPVVAWIRQKKTRPVSSPGLSNGPYVGSRSERHLFLLKTE 384
           R +V W+   KT P++   +S+G +V    + H+F+L+ E
Sbjct: 98  RGLVKWLMNSKTHPLTRQPISSGVFVSCMRKLHVFILQNE 137


>UniRef50_Q5A4E5 Cluster: DNA polymerase; n=1; Candida albicans|Rep:
           DNA polymerase - Candida albicans (Yeast)
          Length = 1261

 Score = 34.3 bits (75), Expect = 3.6
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -2

Query: 427 LSHQSS*TLRNEFKFQFSVKRGVFQTY-YQHTVRLINQVKRRDEF 296
           L H  + TL+   K+QF ++ GV Q+Y Y+++   +   +R DEF
Sbjct: 755 LKHDEAYTLKKNTKYQFQIEPGVTQSYDYKYSYNSMKISRRPDEF 799


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 750,000,716
Number of Sequences: 1657284
Number of extensions: 13957349
Number of successful extensions: 27634
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27629
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 68731504465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)