Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0030
         (800 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    22   5.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   6.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   6.5  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    21   8.7  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    21   8.7  

>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 260 HDDQ*WLGYDKKKLVPSLHLVYQTDRML 343
           +DD  W+G+D  K V +L   Y  D  L
Sbjct: 317 YDDTLWVGFDNPKSV-ALKAQYAKDNNL 343


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -2

Query: 268 VVMRSSEVALWKLRNEDPELVVVPV 194
           +  ++S   +W L   +P L ++PV
Sbjct: 224 ITAQASSFVVWPLVENNPTLYLIPV 248


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -2

Query: 268 VVMRSSEVALWKLRNEDPELVVVPV 194
           +  ++S   +W L   +P L ++PV
Sbjct: 224 ITAQASSFVVWPLVENNPTLYLIPV 248


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 520 LIERHTAXAVWRCXCFFLLLV*IDKFT 440
           L+  +T    + C CF+ LLV +  F+
Sbjct: 313 LVVIYTFNLFYLCFCFYWLLVMVAMFS 339


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 520 LIERHTAXAVWRCXCFFLLLV*IDKFT 440
           L+  +T    + C CF+ LLV +  F+
Sbjct: 269 LVVIYTFNLFYLCFCFYWLLVMVAMFS 295


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,912
Number of Sequences: 336
Number of extensions: 3427
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)