Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0030
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0153 - 12814596-12815645                                         30   1.9  
03_03_0150 + 14872035-14872472,14874895-14875725                       29   5.7  

>09_03_0153 - 12814596-12815645
          Length = 349

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -2

Query: 106 PLLQKAYGLEAVSGSSRRPGSHTRIFRLIAVRLL 5
           PLL + YG+  V+ SS      TR+F L A++LL
Sbjct: 13  PLLVQRYGVAGVTPSSSSSSMATRVFSLPAMKLL 46


>03_03_0150 + 14872035-14872472,14874895-14875725
          Length = 422

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = -3

Query: 228 GTKIPNL*LYQFRLSSIYSWRLKSHPSYYGIGTDRNLRLGYHYCRKLMGLRQLVVARGGR 49
           G  +P + ++Q R  ++    +   P   G    R+++ G H  R L G  Q V A GGR
Sbjct: 143 GVCLPRICVFQLRQGNLAPGAVSDSPEPEG---GRDVQAGVHEARGLAGGVQEVEAHGGR 199

Query: 48  GRIPVSSD 25
             +    D
Sbjct: 200 VGVGADDD 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,360,902
Number of Sequences: 37544
Number of extensions: 392264
Number of successful extensions: 740
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)