Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0030
         (800 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49845| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.82 
SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_25236| Best HMM Match : TB (HMM E-Value=1.1)                        29   4.4  
SB_20649| Best HMM Match : SpoIIP (HMM E-Value=1.3)                    29   4.4  
SB_1913| Best HMM Match : Arf (HMM E-Value=0.015)                      29   5.8  
SB_58170| Best HMM Match : Spindle_assoc (HMM E-Value=2.3)             28   7.7  
SB_43952| Best HMM Match : Spindle_assoc (HMM E-Value=2.3)             28   7.7  

>SB_49845| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
 Frame = -1

Query: 542 PSRQS---RLVDRTTHCXGRLAVRLFFFI----TSIDRQVYGLPGVKSPELID 405
           PSR     RL+++T H   R+  +  FF+    TS  ++ YG    K+P  ID
Sbjct: 16  PSRNDYLQRLIEKTEHFLRRMRWKAHFFLNPDPTSFSKETYGFKSTKNPPPID 68


>SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1360

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 11/59 (18%)
 Frame = -1

Query: 542  PSRQS---RLVDRTTHCXGRLAVRLFFFI----TSIDRQVYGLPGVK-SP---ELIDFE 399
            PSR     RL+++T H   R+  +  FF+    TS  ++ YG    K SP   EL DFE
Sbjct: 910  PSRNDYLQRLIEKTEHFLRRMRWKAHFFLNADPTSFSKETYGFKSTKNSPPIDELKDFE 968


>SB_25236| Best HMM Match : TB (HMM E-Value=1.1)
          Length = 397

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 651 CEGXVAVTFLARDFSSFLAEYI 586
           C G + +T L R+FS+FL +Y+
Sbjct: 209 CRGGINITALQREFSTFLEDYL 230


>SB_20649| Best HMM Match : SpoIIP (HMM E-Value=1.3)
          Length = 466

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 11/59 (18%)
 Frame = -1

Query: 542 PSRQS---RLVDRTTHCXGRLAVRLFFFI----TSIDRQVYGLPGVK-SP---ELIDFE 399
           PSR     RL+++T H   R+  +  FF+    TS  ++ YG    K SP   EL DFE
Sbjct: 16  PSRNDYLQRLIEKTEHFLRRMRWKAHFFLNADPTSFSKETYGFKSTKNSPPIDELKDFE 74


>SB_1913| Best HMM Match : Arf (HMM E-Value=0.015)
          Length = 777

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
 Frame = -1

Query: 527 RLVDRTTHCXGRLAVRLFFFI----TSIDRQVYGLPGVKSP----ELIDFEK 396
           RL+++T H   R+  + +FF+     S  ++ YG    K+P    EL +FE+
Sbjct: 94  RLIEKTEHFLRRMRWKAYFFLNTDTASTSKETYGFRSTKNPPPVEELKEFEE 145


>SB_58170| Best HMM Match : Spindle_assoc (HMM E-Value=2.3)
          Length = 310

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 20/48 (41%), Positives = 24/48 (50%)
 Frame = +1

Query: 289 QKKTRPVSSPGLSNGPYVGSRSERHLFLLKTEI*THFSKSMSSGDLTP 432
           Q KT   S+  L   PY  SRS  +L  LK E  T+F +S S   L P
Sbjct: 156 QPKTE-ASAAFLGTKPYTKSRSFSNLEFLKEESLTNFQRSGSLPKLDP 202


>SB_43952| Best HMM Match : Spindle_assoc (HMM E-Value=2.3)
          Length = 310

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 20/48 (41%), Positives = 24/48 (50%)
 Frame = +1

Query: 289 QKKTRPVSSPGLSNGPYVGSRSERHLFLLKTEI*THFSKSMSSGDLTP 432
           Q KT   S+  L   PY  SRS  +L  LK E  T+F +S S   L P
Sbjct: 156 QPKTE-ASAAFLGTKPYTKSRSFSNLEFLKEESLTNFQRSGSLPKLDP 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,038,074
Number of Sequences: 59808
Number of extensions: 433861
Number of successful extensions: 770
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)