Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0028
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17881| Best HMM Match : Tubulin (HMM E-Value=0) 239 1e-63
SB_47198| Best HMM Match : Tubulin (HMM E-Value=0) 235 3e-62
SB_17879| Best HMM Match : Tubulin (HMM E-Value=0) 232 3e-61
SB_18752| Best HMM Match : No HMM Matches (HMM E-Value=.) 182 3e-46
SB_39308| Best HMM Match : Tubulin (HMM E-Value=0) 123 1e-28
SB_19437| Best HMM Match : Tubulin (HMM E-Value=0) 109 3e-24
SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.) 108 5e-24
SB_2674| Best HMM Match : Tubulin (HMM E-Value=0) 107 7e-24
SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.) 107 9e-24
SB_2003| Best HMM Match : Tubulin (HMM E-Value=0) 107 9e-24
SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.) 107 1e-23
SB_48074| Best HMM Match : Tubulin (HMM E-Value=4.4e-27) 106 2e-23
SB_34400| Best HMM Match : Tubulin (HMM E-Value=0) 106 2e-23
SB_48961| Best HMM Match : Tubulin (HMM E-Value=0) 80 2e-15
SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.) 76 4e-14
SB_22190| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 2e-13
SB_28561| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 2e-11
SB_37573| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 1e-06
SB_51156| Best HMM Match : Tubulin_C (HMM E-Value=0) 48 6e-06
SB_35594| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_5512| Best HMM Match : Tubulin (HMM E-Value=0) 43 3e-04
SB_47142| Best HMM Match : Tubulin (HMM E-Value=5.32493e-44) 42 4e-04
SB_25311| Best HMM Match : Tubulin (HMM E-Value=0) 41 0.001
SB_2586| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_47795| Best HMM Match : Tubulin_C (HMM E-Value=0.24) 39 0.005
SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32) 36 0.046
SB_1799| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 7.0
>SB_17881| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 458
Score = 239 bits (586), Expect = 1e-63
Identities = 109/135 (80%), Positives = 116/135 (85%)
Frame = +2
Query: 38 LYKMREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGG 217
L+KMREIVH QAGQCGNQIGAK WE+ISDEHGI PTG YHGDSDLQLERINVYYNEA+GG
Sbjct: 211 LFKMREIVHCQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGG 270
Query: 218 KYVPRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVL 397
KYVPRA+L DLEPGT DSVRSGP QIFRPDNFVF QSGAG NWA GHYT GAEL SVL
Sbjct: 271 KYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 330
Query: 398 DAXRKESKSCNVPTG 442
D RKE++SC+ G
Sbjct: 331 DVVRKEAESCDCLQG 345
Score = 31.5 bits (68), Expect = 0.76
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = +1
Query: 448 QLTHSLXXXXXXXXGTLLXXKXREEXPXR 534
QLTHSL GTLL K REE P R
Sbjct: 347 QLTHSLGGGTGSGMGTLLISKIREEYPDR 375
>SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 235 bits (575), Expect = 3e-62
Identities = 108/132 (81%), Positives = 113/132 (85%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYV 226
MREIVH QAGQCGNQIGAK WE+ISDEHGI PTG YHGDSDLQLERINVYYNEA+GGKYV
Sbjct: 1 MREIVHCQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60
Query: 227 PRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLDAX 406
PRAIL DLEPGT DSVRSGP QIFRPDNFVF QSGAG NWA GHYT GAEL SVLD
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120
Query: 407 RKESKSCNVPTG 442
RKE++SC+ G
Sbjct: 121 RKEAESCDCLQG 132
Score = 31.5 bits (68), Expect = 0.76
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = +1
Query: 448 QLTHSLXXXXXXXXGTLLXXKXREEXPXR 534
QLTHSL GTLL K REE P R
Sbjct: 134 QLTHSLGGGTGSGMGTLLISKIREEYPDR 162
>SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 232 bits (567), Expect = 3e-61
Identities = 106/132 (80%), Positives = 113/132 (85%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYV 226
MREIV LQAGQCGNQIGAK WE+ISDEHGI PTG YHGDSDLQLERINVYYNEA+GGKYV
Sbjct: 1 MREIVSLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60
Query: 227 PRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLDAX 406
PR++L DLEPGT DSVRSGP QIFRPDNFVF QSGAG NWA GHYT GAEL SVLD
Sbjct: 61 PRSVLIDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELMDSVLDVV 120
Query: 407 RKESKSCNVPTG 442
RKE++SC+ G
Sbjct: 121 RKEAESCDCIQG 132
Score = 31.5 bits (68), Expect = 0.76
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = +1
Query: 448 QLTHSLXXXXXXXXGTLLXXKXREEXPXR 534
QLTHSL GTLL K REE P R
Sbjct: 134 QLTHSLGGGTGSGMGTLLISKIREEYPDR 162
>SB_18752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 182 bits (443), Expect = 3e-46
Identities = 82/92 (89%), Positives = 84/92 (91%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYV 226
MREIVH QAGQCGNQIGAK WE+ISDEHGI PTG YHGDSDLQLERINVYYNEA+GGKYV
Sbjct: 1 MREIVHCQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 60
Query: 227 PRAILXDLEPGTXDSVRSGPXXQIFRPDNFVF 322
PRAIL DLEPGT DSVRSGP QIFRPDNFVF
Sbjct: 61 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVF 92
>SB_39308| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 391
Score = 123 bits (297), Expect = 1e-28
Identities = 57/76 (75%), Positives = 61/76 (80%)
Frame = +2
Query: 215 GKYVPRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSV 394
GKYVPRA+L DLEPGT DSVRSGP QIFRPDNFVF QSGAG NWA GHYT GAEL SV
Sbjct: 2 GKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSV 61
Query: 395 LDAXRKESKSCNVPTG 442
LD RKE++SC+ G
Sbjct: 62 LDVVRKEAESCDCIQG 77
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = +1
Query: 448 QLTHSLXXXXXXXXGTLLXXKXREEXPXR 534
QLTHSL TLL K REE P R
Sbjct: 79 QLTHSLGGGTGSGMVTLLILKIREEYPDR 107
>SB_19437| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 885
Score = 109 bits (261), Expect = 3e-24
Identities = 53/129 (41%), Positives = 70/129 (54%), Gaps = 2/129 (1%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQL--ERINVYYNEASGGK 220
MRE + + GQ G QIG WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 221 YVPRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLD 400
+VPRA+ DLEP D VR+G Q+F P+ V + A N+A GHYT G E+ VLD
Sbjct: 61 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLVTGKEDAANNYARGHYTVGKEIVDLVLD 120
Query: 401 AXRKESKSC 427
RK + C
Sbjct: 121 RIRKLADQC 129
Score = 109 bits (261), Expect = 3e-24
Identities = 52/131 (39%), Positives = 71/131 (54%), Gaps = 2/131 (1%)
Frame = +2
Query: 41 YKMREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQL--ERINVYYNEASG 214
Y+ RE + + GQ G QIG WE+ EHGI P G D + + N +++E
Sbjct: 432 YEERECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGA 491
Query: 215 GKYVPRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSV 394
GK+VPRA+ DLEP D VR+G Q+F P+ + + A N+A GHYT G E+ V
Sbjct: 492 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIVDLV 551
Query: 395 LDAXRKESKSC 427
LD RK + C
Sbjct: 552 LDRIRKLADQC 562
>SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 108 bits (259), Expect = 5e-24
Identities = 51/129 (39%), Positives = 71/129 (55%), Gaps = 2/129 (1%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQL--ERINVYYNEASGGK 220
MRE + + GQ G Q+G WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGSGK 60
Query: 221 YVPRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLD 400
+VPRA+ DLEP D VR+G Q+F P+ + + A N+A GHYT G E+ +VLD
Sbjct: 61 HVPRAVFCDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEMIDTVLD 120
Query: 401 AXRKESKSC 427
RK + C
Sbjct: 121 RLRKLADGC 129
>SB_2674| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 1036
Score = 107 bits (258), Expect = 7e-24
Identities = 52/129 (40%), Positives = 70/129 (54%), Gaps = 2/129 (1%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQL--ERINVYYNEASGGK 220
+RE + + GQ G QIG WE+ EHGI P G D + + N +++E GK
Sbjct: 586 VRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 645
Query: 221 YVPRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLD 400
+VPRA+ DLEP D VR+G Q+F P+ + + A N+A GHYT G EL VLD
Sbjct: 646 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDLVLD 705
Query: 401 AXRKESKSC 427
RK + C
Sbjct: 706 RIRKLADQC 714
Score = 106 bits (255), Expect = 2e-23
Identities = 52/132 (39%), Positives = 70/132 (53%), Gaps = 2/132 (1%)
Frame = +2
Query: 38 LYKMREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQL--ERINVYYNEAS 211
L RE + + GQ G QIG WE+ EHGI P G D + + N +++E
Sbjct: 62 LILQRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETG 121
Query: 212 GGKYVPRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXS 391
GK+VPRA+ DLEP D VR+G Q+F P+ + + A N+A GHYT G E+
Sbjct: 122 AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDL 181
Query: 392 VLDAXRKESKSC 427
VLD RK + C
Sbjct: 182 VLDRIRKLADQC 193
Score = 62.5 bits (145), Expect = 4e-10
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Frame = +2
Query: 50 REIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDL--QLERINVYYNEASGGKY 223
RE + + GQ G QIG WE+ EHGI P G D + + N +++E GK+
Sbjct: 514 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 573
Query: 224 VPRAILXDLEPGTXDSV 274
VPRA+ DLEP + +
Sbjct: 574 VPRAVFVDLEPTVRECI 590
>SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1231
Score = 107 bits (257), Expect = 9e-24
Identities = 51/131 (38%), Positives = 71/131 (54%), Gaps = 2/131 (1%)
Frame = +2
Query: 41 YKMREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQL--ERINVYYNEASG 214
Y+ RE + + GQ G Q+G WE+ EHGI P G D + + N +++E
Sbjct: 803 YEERECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGA 862
Query: 215 GKYVPRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSV 394
GK+VPRA+ DLEP D VR+G Q+F P+ + + A N+A GHYT G E+ V
Sbjct: 863 GKHVPRAVFADLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEMIDLV 922
Query: 395 LDAXRKESKSC 427
LD RK + C
Sbjct: 923 LDRIRKLADQC 933
Score = 103 bits (248), Expect = 1e-22
Identities = 51/128 (39%), Positives = 67/128 (52%), Gaps = 2/128 (1%)
Frame = +2
Query: 50 REIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQL--ERINVYYNEASGGKY 223
RE + + GQ G QIG WE+ EHGI P G D + + N ++ E GK+
Sbjct: 373 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFAETGAGKH 432
Query: 224 VPRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLDA 403
VPRA+ DLEP D VR+G Q+F P+ + + A N+A GHYT G E VLD
Sbjct: 433 VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEQIDIVLDR 492
Query: 404 XRKESKSC 427
RK + C
Sbjct: 493 LRKLADGC 500
>SB_2003| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 451
Score = 107 bits (257), Expect = 9e-24
Identities = 51/129 (39%), Positives = 70/129 (54%), Gaps = 2/129 (1%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQL--ERINVYYNEASGGK 220
MRE + + GQ G Q+G WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MRECISIHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 221 YVPRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLD 400
+VPRA+ DLEP D VR+G Q+F P+ + + A N+A GHYT G E+ VLD
Sbjct: 61 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 401 AXRKESKSC 427
RK + C
Sbjct: 121 RCRKLADQC 129
>SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 107 bits (256), Expect = 1e-23
Identities = 50/132 (37%), Positives = 72/132 (54%), Gaps = 2/132 (1%)
Frame = +2
Query: 41 YKMREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQL--ERINVYYNEASG 214
Y+ RE V + GQ G Q+G WE+ EHGI P G D + + N +++E
Sbjct: 417 YEERECVSIHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGA 476
Query: 215 GKYVPRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSV 394
GK+VPRA+ DLEP D +R+G Q+F P+ + + A N+A GHYT G + +V
Sbjct: 477 GKHVPRAVFVDLEPSVIDEIRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKDHIDNV 536
Query: 395 LDAXRKESKSCN 430
LD RK + C+
Sbjct: 537 LDRIRKLADQCS 548
Score = 92.3 bits (219), Expect = 4e-19
Identities = 44/114 (38%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Frame = +2
Query: 92 IGAKXWEIISDEHGIXPTGAYHGDSDLQL--ERINVYYNEASGGKYVPRAILXDLEPGTX 265
+G WE+ EHGI P G D + + N +++E GK+VPRA+ DLEP
Sbjct: 1 MGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFCDLEPTVV 60
Query: 266 DSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLDAXRKESKSC 427
D VR+G Q+F P+ + + A N+A GHYT G +L VLD RK + C
Sbjct: 61 DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKQLIEIVLDRLRKLADQC 114
>SB_48074| Best HMM Match : Tubulin (HMM E-Value=4.4e-27)
Length = 144
Score = 106 bits (255), Expect = 2e-23
Identities = 46/78 (58%), Positives = 58/78 (74%)
Frame = +2
Query: 209 SGGKYVPRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXX 388
+GG+YVPR+IL DLEPGT D+VR GP +FRPDNFV QSGA NWA GHY+ GAEL
Sbjct: 11 TGGRYVPRSILVDLEPGTMDAVRGGPLGNMFRPDNFVNSQSGAANNWAKGHYSEGAELID 70
Query: 389 SVLDAXRKESKSCNVPTG 442
++ D RKE+++C+ G
Sbjct: 71 NIFDVLRKEAENCDCMQG 88
>SB_34400| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 380
Score = 106 bits (255), Expect = 2e-23
Identities = 51/128 (39%), Positives = 69/128 (53%), Gaps = 2/128 (1%)
Frame = +2
Query: 50 REIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQL--ERINVYYNEASGGKY 223
RE + + GQ G QIG WE+ EHGI P G D + + N +++E GK+
Sbjct: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 60
Query: 224 VPRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLDA 403
VPRA+ DLEP D VR+G Q+F P+ + + A N+A GHYT G E+ VLD
Sbjct: 61 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIIDLVLDR 120
Query: 404 XRKESKSC 427
RK + C
Sbjct: 121 IRKLADQC 128
>SB_48961| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 536
Score = 80.2 bits (189), Expect = 2e-15
Identities = 45/130 (34%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDL--QLERINVYYNEASGGK 220
MRE + + GQ G QIG WE+ EHGI P G D + N +++E GK
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTQGGGDDSFNTFFSETGAGK 60
Query: 221 YVPRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLD 400
+VPRA+ DLEP P+ + + A N+A GHYT G + VLD
Sbjct: 61 HVPRAVFVDLEPTVV----------ALSPEQLITGKEDAANNYARGHYTIGKQQVDQVLD 110
Query: 401 AXRKESKSCN 430
RK + C+
Sbjct: 111 RLRKLADQCS 120
>SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1383
Score = 75.8 bits (178), Expect = 4e-14
Identities = 33/77 (42%), Positives = 47/77 (61%)
Frame = +2
Query: 200 NEASGGKYVPRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAE 379
+EA+ GKYVPRA+L DLEP D VR+G ++ P+ + + A N+A GHYT G E
Sbjct: 965 SEAAAGKYVPRAVLVDLEPTVIDEVRTGMYRYLYHPEQMISGKEDAANNYARGHYTIGKE 1024
Query: 380 LXXSVLDAXRKESKSCN 430
+ V+D RK + C+
Sbjct: 1025 MVEVVMDKIRKMTDQCS 1041
>SB_22190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 417
Score = 73.3 bits (172), Expect = 2e-13
Identities = 32/83 (38%), Positives = 45/83 (54%)
Frame = +2
Query: 179 ERINVYYNEASGGKYVPRAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINWAXG 358
+ N ++ E GK+VPRA+ DLEP D +R+G Q+F P+ + + A N+A G
Sbjct: 12 DSFNTFFAETGAGKHVPRAVFVDLEPTVIDEIRTGTYRQLFHPEQLLSGKEDAANNYARG 71
Query: 359 HYTXGAELXXSVLDAXRKESKSC 427
HYT G E LD RK + C
Sbjct: 72 HYTVGKEHIDLALDRIRKLADQC 94
>SB_28561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 66.9 bits (156), Expect = 2e-11
Identities = 31/72 (43%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Frame = +2
Query: 47 MREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQ--LERINVYYNEASGGK 220
MRE + + GQ G QIG WE+ EHGI P G D + + N +++E GGK
Sbjct: 1 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIDGGDDSFNTFFSETGGGK 60
Query: 221 YVPRAILXDLEP 256
+VPRA+ DLEP
Sbjct: 61 HVPRAVFVDLEP 72
>SB_37573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 50.8 bits (116), Expect = 1e-06
Identities = 23/54 (42%), Positives = 30/54 (55%)
Frame = +2
Query: 266 DSVRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLDAXRKESKSC 427
D VR+G Q+F P+ + + A N+A GHYT G EL VLD RK + C
Sbjct: 13 DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDLVLDRIRKLADQC 66
>SB_51156| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 377
Score = 48.4 bits (110), Expect = 6e-06
Identities = 22/52 (42%), Positives = 29/52 (55%)
Frame = +2
Query: 272 VRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLDAXRKESKSC 427
VR+G Q+F P+ + + A N+A GHYT G EL VLD RK + C
Sbjct: 3 VRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDLVLDRIRKLADQC 54
>SB_35594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 50
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/47 (44%), Positives = 27/47 (57%)
Frame = +2
Query: 272 VRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLDAXRK 412
VR+G Q+F P+ + + A N+A GHYT G EL VLD RK
Sbjct: 3 VRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDLVLDRIRK 49
>SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 45.6 bits (103), Expect = 4e-05
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Frame = +2
Query: 35 NLYKMREIVHLQAGQCGNQIGAKXWEIISDEHGIXPTGAYHGDSDLQLER----INVYYN 202
++ MRE + + GQ G QIG WE+ EHGI P G H SD +R + +++
Sbjct: 192 SIQTMRECLSIHVGQAGVQIGNACWELYCLEHGIQPDG--HMPSDQSADRCDDSFSTFFS 249
Query: 203 EASGGKY 223
E + GK+
Sbjct: 250 ETASGKH 256
>SB_5512| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 365
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +2
Query: 272 VRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLDAXRKESKSC 427
+R+G Q+F P+ + + A N+A GHYT G E LD RK + C
Sbjct: 3 IRTGTYRQLFHPEQLLSGKEDAANNYARGHYTVGKEHIDLALDRIRKLADQC 54
>SB_47142| Best HMM Match : Tubulin (HMM E-Value=5.32493e-44)
Length = 474
Score = 42.3 bits (95), Expect = 4e-04
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 9/134 (6%)
Frame = +2
Query: 56 IVHLQAGQCGNQIGAKXWEIISDE------HGIXPTGAYHGDSDLQLERINVYYNEASGG 217
IV LQ GQCGNQIG + +++I ++ + ++ + E + ++ +
Sbjct: 3 IVTLQLGQCGNQIGRELFDLIVEDATKLNSRFLCKELTTRSCTEYEEESLARFFTRENDD 62
Query: 218 KYVPRAILXDLEPGTXDSVRSGPXXQ-IFR-PDNFVFXQS-GAGINWAXGHYTXGAELXX 388
RA+ D+E S +R P F Q G+G NWA G G +
Sbjct: 63 ILNARAVSIDMESKVISQTLSEASKSGTWRYPKGQQFSQKRGSGNNWAHGFSEHGPKSID 122
Query: 389 SVLDAXRKESKSCN 430
VLD ++E + C+
Sbjct: 123 KVLDLVQREVEKCD 136
>SB_25311| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 629
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/39 (46%), Positives = 24/39 (61%)
Frame = +2
Query: 326 QSGAGINWAXGHYTXGAELXXSVLDAXRKESKSCNVPTG 442
Q+ A NWA G YT GAEL S +D RK +++C+ G
Sbjct: 2 QNSAANNWAKGFYTEGAELMDSGMDCIRKLAENCDTVQG 40
>SB_2586| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 38
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +2
Query: 107 WEIISDEHGIXPTGAYHG-DSDLQLERINVYYNE 205
WE+I++EHGI P G S +Q +R+NVY++E
Sbjct: 2 WEVIAEEHGIDPDGQCTAVQSKIQTDRLNVYFDE 35
>SB_47795| Best HMM Match : Tubulin_C (HMM E-Value=0.24)
Length = 149
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +2
Query: 272 VRSGPXXQIFRPDNFVFXQSGAGINWAXGHYTXGAELXXSVLDAXRK 412
VR G +F PD + + A N+A GHYT G E L+ RK
Sbjct: 3 VRMGTYRDLFHPDQLITGKEDAANNYARGHYTVGKEHIDLTLEKIRK 49
>SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32)
Length = 488
Score = 35.5 bits (78), Expect = 0.046
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 230 RAILXDLEPGTXDSVRSGPXXQIFRPDNFVFXQSGAGINW 349
RA+L D+E G +++ GP +F + SG G NW
Sbjct: 76 RAVLIDMEEGVVNNILKGPLHDVFDCQQLITDVSGCGNNW 115
>SB_1799| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 907
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = +2
Query: 116 ISDEHGIXPTGAYHGDSDLQLERINVYYNEASGGKYVPRAILXDLEP 256
+ D G GD L L + +Y E G + V R + LEP
Sbjct: 792 VDDVRGCFQEALKEGDGQLTLNSLIEHYKELEGSEKVARELFAMLEP 838
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,627,604
Number of Sequences: 59808
Number of extensions: 220398
Number of successful extensions: 454
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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