Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0028
         (750 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY334011-1|AAR01136.1|  188|Anopheles gambiae beta-tubulin protein.    35   0.002
AY334010-1|AAR01135.1|  188|Anopheles gambiae beta-tubulin protein.    35   0.002
AY334009-1|AAR01134.1|  188|Anopheles gambiae beta-tubulin protein.    35   0.002
AY334008-1|AAR01133.1|  188|Anopheles gambiae beta-tubulin protein.    35   0.002
U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles ...    26   1.1  

>AY334011-1|AAR01136.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 35.1 bits (77), Expect = 0.002
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +2

Query: 359 HYTXGAELXXSVLDAXRKESKSCNVPTG 442
           HYT GAEL  +VLD  RKE ++C+   G
Sbjct: 1   HYTEGAELVDAVLDVVRKECENCDCLQG 28



 Score = 31.5 bits (68), Expect = 0.029
 Identities = 16/29 (55%), Positives = 16/29 (55%)
 Frame = +1

Query: 448 QLTHSLXXXXXXXXGTLLXXKXREEXPXR 534
           QLTHSL        GTLL  K REE P R
Sbjct: 30  QLTHSLGGGTGSGMGTLLISKIREEYPDR 58


>AY334010-1|AAR01135.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 35.1 bits (77), Expect = 0.002
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +2

Query: 359 HYTXGAELXXSVLDAXRKESKSCNVPTG 442
           HYT GAEL  +VLD  RKE ++C+   G
Sbjct: 1   HYTEGAELVDAVLDVVRKECENCDCLQG 28



 Score = 31.5 bits (68), Expect = 0.029
 Identities = 16/29 (55%), Positives = 16/29 (55%)
 Frame = +1

Query: 448 QLTHSLXXXXXXXXGTLLXXKXREEXPXR 534
           QLTHSL        GTLL  K REE P R
Sbjct: 30  QLTHSLGGGTGSGMGTLLISKIREEYPDR 58


>AY334009-1|AAR01134.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 35.1 bits (77), Expect = 0.002
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +2

Query: 359 HYTXGAELXXSVLDAXRKESKSCNVPTG 442
           HYT GAEL  +VLD  RKE ++C+   G
Sbjct: 1   HYTEGAELVDAVLDVVRKECENCDCLQG 28



 Score = 31.5 bits (68), Expect = 0.029
 Identities = 16/29 (55%), Positives = 16/29 (55%)
 Frame = +1

Query: 448 QLTHSLXXXXXXXXGTLLXXKXREEXPXR 534
           QLTHSL        GTLL  K REE P R
Sbjct: 30  QLTHSLGGGTGSGMGTLLISKIREEYPDR 58


>AY334008-1|AAR01133.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 35.1 bits (77), Expect = 0.002
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +2

Query: 359 HYTXGAELXXSVLDAXRKESKSCNVPTG 442
           HYT GAEL  +VLD  RKE ++C+   G
Sbjct: 1   HYTEGAELVDAVLDVVRKECENCDCLQG 28



 Score = 31.5 bits (68), Expect = 0.029
 Identities = 16/29 (55%), Positives = 16/29 (55%)
 Frame = +1

Query: 448 QLTHSLXXXXXXXXGTLLXXKXREEXPXR 534
           QLTHSL        GTLL  K REE P R
Sbjct: 30  QLTHSLGGGTGSGMGTLLISKIREEYPDR 58


>U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles
           gambiae putativetubulin alpha chain mRNA, complete cds.
           ).
          Length = 91

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 47  MREIVHLQAGQCGNQIGAKXWE 112
           MRE + +  GQ G QIG   W+
Sbjct: 1   MRECISVHVGQAGVQIGNPCWD 22


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 532,020
Number of Sequences: 2352
Number of extensions: 8012
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 77339358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)